Re: [Open Babel] Help to conversion format cif_to_pdb

2014-04-14 Thread Wellisson Gonçalves
I know about that But i don't get compile I receive a lot of compilation errors But a find a other tool http://sw-tools.pdb.org/apps/CIFTr/index.html It's very simple But i'm developing a bioinformatics tool using C++ with QT for platforms linux, MAC OS X and windows It's necessary to me put a f

[Open Babel] MMFF94 forcefield phenol atom typing

2014-04-14 Thread Toby Wright
Hi, I'm attempting to use the MMFF94 forcefield to generate partial charges. I noticed that the molecule whose smiles is Oc1ncccn1 (aka a phenol with two carbons switched to nitrogens) gave the atom type 29 to the hydrogen attached to the oxygen. Looking into the code in forcefields/forcefieldmmf

Re: [Open Babel] Help to conversion format cif_to_pdb

2014-04-14 Thread David Hall
Can you explain what parts of the file are not compatible that you are looking at? Residue numbering? Temperature Factors? Testing briefly, it appears the coordinates agree, so knowing that fields you are looking to preserve would be useful. -David On Sat, Apr 12, 2014 at 3:20 PM, Wellisson Gonç