Re: [Open Babel] Problems Compiling OpenBabel for x64 Windows

2011-07-29 Thread Noel O'Boyle
At runtime, Windows looks on the PATH to find DLLs. You should ensure that windows-vc2008\build64\bin\Release is at the front of the PATH, along with windows-vc2008\libs\64 (or whatever it's called). You can use (the free) Dependency Walker to find the locations of the DLLs that Windows is going to

Re: [Open Babel] pybel - (howto) calculation of RMSD for two molecules (but different conformers)

2011-07-29 Thread zhang.boyu84
Hi Noel, Thanks for the python script! I am trying to compute the symmetry corrected rmsd too, and I export the dev version here: https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/branches/openbabel-2-3-x/ and build it. But I still get the same error, could you let me know if I am

Re: [Open Babel] pybel - (howto) calculation of RMSD for two molecules (but different conformers)

2011-07-29 Thread Noel O'Boyle
You should be working off the trunk. "openbabel/trunk" - Noel On 28 July 2011 20:22, zhang.boyu84 wrote: > Hi Noel, > > Thanks for the python script! I am trying to compute the symmetry corrected > rmsd too, and I export the dev version here: > https://openbabel.svn.sourceforge.net/svnroot/openb

Re: [Open Babel] Problems Compiling OpenBabel for x64 Windows

2011-07-29 Thread Jimmy G Lafontaine Rivera
Everything works now. Thanks a lot. I compiled the inchi library for 64bit use. Do you guys want me to post those anywhere? Again, I really appreciate all the help. Thanks a lot, Jimmy On Fri, Jul 29, 2011 at 1:27 AM, Noel O'Boyle wrote: > At runtime, Windows looks on the PATH to find DLLs. You

Re: [Open Babel] Problems Compiling OpenBabel for x64 Windows

2011-07-29 Thread Jimmy G Lafontaine Rivera
I have one more question. Is there anyway to differentiate between a ketone and an aldehyde in a substructure search? On Fri, Jul 29, 2011 at 2:44 PM, Jimmy G Lafontaine Rivera wrote: > Everything works now. Thanks a lot. I compiled the inchi library for 64bit > use. Do you guys want me to post

Re: [Open Babel] Ketone vs. Aldehyde (was Problems Compiling OpenBabel for x64 Windows)

2011-07-29 Thread Geoffrey Hutchison
On Jul 29, 2011, at 7:31 PM, Jimmy G Lafontaine Rivera wrote: > I have one more question. Is there anyway to differentiate between a ketone > and an aldehyde in a substructure search? Sure. See, for example: http://www.daylight.com/dayhtml_tutorials/languages/smarts/smarts_examples.html#GROUP