Re: [Open Babel] obconformer

2016-07-17 Thread Geoffrey Hutchison
> it shows me that the best of the 250 randomly generatet conformation has an > energy at somewhere about 3.5 kcal/mol but after the minimization of this > conformation the energy converges at about 68.2 kcal/mol. I think you really need to provide us with the molecule before we can help you fu

Re: [Open Babel] obconformer probelm

2011-11-21 Thread Geoffrey Hutchison
> 1. is it possible to generate the full set of rotamers ( any specified > amount) rather then one with the lowest energy? If ansew to my question is > yes, then HOW Can I ask f.e about structures of top 100? > 2. by default. this program calculates # of rotatable bonds and # of > rotamers