Re: [Open Babel] Question about file conversion

2016-05-10 Thread Chris Swain
You need to have the SMILES string(s) in a plain text file. It should look like this c1c1 c1c1F C1C1 (=O)Cl and ideally you should name it something like myfile.si or myfile.smiles Enter the path to the file in the input file field. Cheers, Chris > > Message: 1 > Date: Sun, 8

Re: [Open Babel] Question about file conversion

2016-05-09 Thread Maciek Wójcikowski
Hi, That is a wild guess, since you gave us near to zero information, but what is the first line of your .smi file? If it's not valid smiles, then the reader will give up, since it has finish reading the file on first line. Valid smiles file is: "smiles string, white-space and name", like "c1c