Hi,
Thank you for the valuable comments.
After checking, the pdb file did not exist in the working directory. So,
it was my simple mistake.
Anyway, I got it to work.
Thank you,
Kohsei Tsuji
On 2017/08/24 2:01, Geoffrey Hutchison wrote:
I think my first question is whether 3upo_protein.pdb e
Hi Kohnsei,
I think this particular topic is more appropriate to the AutoDock mailing list.
In any case, from what I see it's not a problem in OpenBabel, but it's more likely that
the protein file is not in the current path.
Best,
S
On 08/20/2017 11:24 PM, Kohsei Tsuji wrote:
Hi dear,
I w
I think my first question is whether 3upo_protein.pdb exists in the directory.
If so, can Open Babel read it on the command line?
obabel 3upo_protein.pdb -O 3upo.mol2
# this will attempt to convert the PDB file to Mol2
-Geoff
>> --receptor 3upo_protein.pdb\
>>
