Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread mpillong
Sure thing! Is the code sufficient, or would you need a runnable jar? package TestClasses; import org.openbabel.OBConversion; import org.openbabel.OBMol; public class TestOBWriteFile { public static void main(String[] args) { System.load("/Applications/OpenBab

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread Noel O'Boyle
Can you provide a complete program that exhibits the problem? Please make it as small as possible. On 4 December 2012 10:06, mpillong wrote: > Ah yes, my bad! Of course, I have also tried different output formats, but > the error remains the same! > > > > -- > View this message in context: > htt

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread mpillong
Ah yes, my bad! Of course, I have also tried different output formats, but the error remains the same! -- View this message in context: http://forums.openbabel.org/Invalid-memory-access-during-OBConversion-WriteFile-tp4655729p4655737.html Sent from the General discussion mailing list archive at

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread Fredrik Wallner
Hi, I was more curious about the output format, not the format of the input files. If the problem is indeed in the writing, it would be interesting to know if it is a specific format or something more general. /Fredrik 4 dec 2012 kl. 10:44 skrev Max Pillong : > Hey Fredrik, > > thanks for th

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread mpillong
Hey Fredrik, thanks for the input. The SetInAndOutFormat returns true, so I'm guessing there's nothing worng here. I've experienced this error with several inputfiles of varying format (pdb, sdf, mol2). Best regards, Max -- View this message in context: http://forums.openbabel.org/Invalid-m

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread Fredrik Wallner
Hi, You should probably test the result from SetInAndOutFormats, just to be sure. If that step failed, you're in trouble. Do you get the error regardless of what format you're using for output? Kind regards, Fredrik 4 dec 2012 kl. 10:16 skrev mpillong : > Hmmm, sorry about that, I was using t

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread mpillong
Hey Noel, indeed I started with the SetOutFormat method. Unfortunately, both methods (SetOut/SetInAndOut) return true, yet, the error during writing still remains, so I'm guessing it's happening somewhere during the writing :/. Thanks for your input! Max -- View this message in context: htt

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread Noel O'Boyle
On 4 December 2012 09:16, mpillong wrote: > Hmmm, sorry about that, I was using the < raw > Tag here ... but here's the > original text. > > Hey everyone, > > I am currently running OpenBabel on a MacOSX 10.6.8 in Eclipse with Java. > Recently, I encountered the following exception during using th

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-04 Thread mpillong
Hmmm, sorry about that, I was using the < raw > Tag here ... but here's the original text. Hey everyone, I am currently running OpenBabel on a MacOSX 10.6.8 in Eclipse with Java. Recently, I encountered the following exception during using the WriteFile() Method in OBConversion: 'Invalid memory

Re: [Open Babel] Invalid memory access during OBConversion.WriteFile()

2012-12-03 Thread Craig James
Your email had no messages in it ... see below. Craig On Mon, Dec 3, 2012 at 6:51 AM, mpillong wrote: > Hey everyone, > > I am currently running OpenBabel on a MacOSX 10.6.8 in Eclipse with Java. > Recently, I encountered the following exception during using the > WriteFile() > Method in OBConv