Re: [Open Babel] 2D or 3D

2020-03-07 Thread Amanda Loshbaugh
What kind of file? Can you open it in a text editor and see if it contains geometric coordinates? Or do you need an automated process? On Fri, Mar 6, 2020, 10:16 PM Chris Swain via OpenBabel-discuss < openbabel-discuss@lists.sourceforge.net> wrote: > Hi, > > Is there a way to tell, using the com

Re: [Open Babel] 2D or 3D

2020-03-07 Thread Chris Swain via OpenBabel-discuss
Hi, In theory any file type, sdf, mol, mol2 etc. I can manually open the file in a text editor and look for z-coordinates but I was wondering if there was some way to detect this automatically so I can include it in a shell script. Cheers, Chris > On 7 Mar 2020, at 08:49, Amanda Loshbaugh w

Re: [Open Babel] 2D or 3D

2012-04-23 Thread Geoffrey Hutchison
> Fingerprints are 1D therefore similarity search is 1D. To my knowledge there > is no shape similarity search in OB. The Spectrophore techniques are shape dependent. http://openbabel.org/docs/current/Fingerprints/spectrophore.html -Geoff -

Re: [Open Babel] 2D or 3D

2012-04-23 Thread Maciek Wójcikowski
Fingerprints are 1D therefore similarity search is 1D. To my knowledge there is no shape similarity search in OB. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl W dniu 23 kwietnia 2012 09:20 użytkownik Jochen Schreiber < joc...@googlemail.com> napisał: > Hello guys,