Re: [Open Babel] partialcharge methods

2011-01-24 Thread Geoffrey Hutchison
> If the charges in the input file are all zero then the output file > will contain nonzero gasteiger partialcharges. Hmm. That would be a bug. I'll take a look. -Geoff -- Special Offer-- Download ArcSight Logger for FRE

Re: [Open Babel] partialcharge methods

2011-01-24 Thread Scott Brozell
Hi, On Fri, Jan 14, 2011 at 04:27:53PM -0500, Geoffrey Hutchison wrote: > > Browsing openbabel-2.3.0/src/charges seems to confirm that > > 'none' is not a charge option. > > Is there another way to ignore the charges ? > > At the moment, not from the user utilities, no. I just added a "none" op

Re: [Open Babel] partialcharge methods

2011-01-14 Thread Geoffrey Hutchison
> Browsing openbabel-2.3.0/src/charges seems to confirm that > 'none' is not a charge option. > Is there another way to ignore the charges ? At the moment, not from the user utilities, no. I just added a "none" option to the development trunk. > 'input_file' - use the charges already in the in

[Open Babel] partialcharge methods

2011-01-03 Thread Scott Brozell
Hi, babel --partialcharge none -i sdf start.sdf -o mol2 start.babel.mol2 == *** Open Babel Error in Do Unknown charge model none 0 molecules converted Browsing openbabel-2.3.0/src/charges seems to confirm that 'none' is not a charge option. Is there another way to