...@gmail.com]
Sent: Wednesday, March 13, 2013 5:32 PM
To: Peter Maas
Subject: Re: [Open Babel] install on Centos 64 bits
Hi Peter,
I'm contacting you directly, hoping this will help saving some time.
If we come up to anything you can always post a summary on the list.
I think you should try a l
.3-56.el5.x86_64
>
>
> -Original Message-
> From: Noel O'Boyle [mailto:baoille...@gmail.com]
> Sent: Wednesday, March 13, 2013 5:21 PM
> To: Peter Maas
> Cc: openbabel-discuss@lists.sourceforge.net
> Subject: Re: [Open Babel] install on Centos 64 bits
>
> I&
t: Re: [Open Babel] install on Centos 64 bits
I'll try this in a VM, but it'll take a little while. Just talking about the
Python 2.4 attempt, did you also install the 64-bit python-devel rpm? The
warning message specifically says that it's linking against a 32-bit python,
e.g.:
/usr/b
I'll try this in a VM, but it'll take a little while. Just talking
about the Python 2.4 attempt, did you also install the 64-bit
python-devel rpm? The warning message specifically says that it's
linking against a 32-bit python, e.g.:
/usr/bin/ld: warning: i386 architecture of input file
`/usr/lib/
Hi Noel,
Just an update on my failing struggles.
So I've restored the initial setting of my CentOS machine, meaning I removed
all version of Python (tricky).
and reinstalled the system python which is python2.4 (and not
-enable-shared).
wget
http://mirror.centos.org/centos/5/os/x86_64/Cen
Hi Noel,
Sorry to bother you again.
So I did try to compile against the system python. It's giving a different
error but I guess the source is the same. It looks like a 32/64 bits issue
to me.
Cheers,
Peter
make clean
cmake ../openbabel-2.3.2
-DEIGEN2_INCLUDE_DIR=/home/peter/li
My bad. Just checked on my VM here, and it's linking against
/usr/lib/libpython2.7.a, so that part seems alright.
I think you're close. Is there a 64-bit system Python (perhaps
available through the package manager)?
- Noel
On 5 March 2013 16:43, Noel O'Boyle wrote:
> You should be compiling ag
You should be compiling against a .so not an .a, e.g. libpython2.6.so.
On 5 March 2013 16:15, Peter Maas wrote:
> Hi Noel,
>
>
>
> Sorry to bother you again.
>
> So I did try to compile against the system python. It’s giving a different
> error but I guess the source is the same. It looks like a
. Any clue? Did I get further or
> into more problems?
>
> ** **
>
> Cheers,
>
> ** **
>
> Peter****
>
> ** **
>
> ** **
>
> *From:* Noel O'Boyle [mailto:baoille...@gmail.com]
> *Sent:* Tuesday, February 19, 2013 3:21 PM
>
> *To:* Pete
get further or
into more problems?
Cheers,
Peter
From: Noel O'Boyle [mailto:baoille...@gmail.com]
Sent: Tuesday, February 19, 2013 3:21 PM
To: Peter Maas
Cc: openbabel-discuss@lists.sourceforge.net
Subject: Re: [Open Babel] install on Centos 64 bits
By define at the command-
ate it very much.
>> Please find it attached.
>>
>> ** **
>>
>> Thanks,
>>
>> ** **
>>
>> Peter
>>
>> ** **
>>
>> *From:* Noel O'Boyle [mailto:baoille...@gmail.com]
>> *Sent:* Tuesday, February 19, 2013 3:21 PM
>
ery much.
> Please find it attached.
>
> ** **
>
> Thanks,
>
> ** **
>
> Peter
>
> ** **
>
> *From:* Noel O'Boyle [mailto:baoille...@gmail.com]
> *Sent:* Tuesday, February 19, 2013 3:21 PM
>
> *To:* Peter Maas
> *Cc:* openbabel-discuss@lists.s
OT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK)***
> *
>
> ** **
>
> So should I install Eigen3 as well?
>
> ** **
>
> Thanks,
>
> ** **
>
> Peter
>
> ** **
>
> *From:* Noel O'Boyle [mailto:baoille...@gmail.com]
&
ON_OK)
So should I install Eigen3 as well?
Thanks,
Peter
From: Noel O'Boyle [mailto:baoille...@gmail.com]
Sent: Monday, February 18, 2013 12:26 PM
To: Peter Maas
Cc: openbabel-discuss@lists.sourceforge.net
Subject: Re: [Open Babel] install on Centos 64 bits
I've seen t
I've seen this before. You should compile against the system Python. Your
locally-compiled version was not compiled in a way consistent with linking
against it (I don't know what options you should have used, but I recognise
the symptoms).
To compile against the system Python, check your CMakeCach
Dear All,
I'm trying to install openbabel with python bindings on a 64 bits CentOS
release 5.9 (kernel 2.6.18-348.1.1.el5).
I performed the following steps:
(I also downloaded and unzipped the eigen2 package as shown in the cmake
line)
tar zxf openbabel-2.3.2.tar.gz
mkdir build
cd bu
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