Re: [Open Babel] Similarity search / Open Babel Warning in ParseSmiles

2013-04-11 Thread Chris Morley
On 10/04/2013 16:55, Pascal Muller wrote: > Dear all, > > I would like to find similar molecules within library and compute > Tanimoto coefficient. > > I'm right by assuming that, using -at0.0, I should retrieve all molecules? > > obabel library.fs -Smol.smi -ofpt -at0.0 > (version 2.3.2) > > But I

[Open Babel] Similarity search / Open Babel Warning in ParseSmiles

2013-04-10 Thread Pascal Muller
Dear all, I would like to find similar molecules within library and compute Tanimoto coefficient. I'm right by assuming that, using -at0.0, I should retrieve all molecules? obabel library.fs -Smol.smi -ofpt -at0.0 (version 2.3.2) But I get only 1098 compounds out of a total of 1579, along with