Re: [Open Babel] SMARTS search query

2017-03-26 Thread teamouting
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Re: [Open Babel] SMARTS search query

2017-03-07 Thread Noel O'Boyle
Best to code it but an imperfect replacement might be a ! with the recursive smarts for a carbocyclic ring. Alternatively match the ones you don't want first and then exclude them. Best to avoid #1 by the way. On 7 Mar 2017 10:09 a.m., "Gravestock David GBJH" < david.gravest...@syngenta.com> wrote

Re: [Open Babel] SMARTS search query

2017-03-07 Thread Stephen Roughley
You could try some sort of recursive SMARTS on the first ring atom, e.g. [!#1][$(*[!#6]),$(**@[!#6]),$(**@*[!#6])]1*1[#5] [!#1][$(*[!#6]),$(*@*[!#6]),$(**@*[!#6])]11[#5] You could also fold the [!#1] into the atom it is attached to, e.g. [H0;$(*[!#6]),$(**@[!#6]),$(**@*[!#6])]1*1[#5] [

[Open Babel] SMARTS search query

2017-03-07 Thread Gravestock David GBJH
Hi, I was wondering if somebody could help me out with generating a SMARTS pattern. I wish to search for 5-/6-membered heteroaryl boronic acids/esters alpha to a non-hydrogen substituent. I have done a search using the following SMARTS [!#1]*1*1[#5] [!#1]*11[#5] But this of course als