Re: [Open Babel] Reset stereochemistry

2010-10-07 Thread Tim Vandermeersch
Hi, On Mon, Oct 4, 2010 at 4:59 PM, Geoffrey Hutchison wrote: >> For Murcko framework generation using pybel, I would like to reset the >> stereochemistry. Even after hydrogen deletion, the E/Z stereochemistry >> is conserved. Is there any way to reset the stereo? > > Well, if you're using Python

Re: [Open Babel] Reset stereochemistry

2010-10-04 Thread Geoffrey Hutchison
> For Murcko framework generation using pybel, I would like to reset the > stereochemistry. Even after hydrogen deletion, the E/Z stereochemistry > is conserved. Is there any way to reset the stereo? Well, if you're using Python, there's an easy way to reset the stereochemistry of a SMILES. Just

[Open Babel] Reset stereochemistry

2010-10-04 Thread Pascal Muller
Hi all, For Murcko framework generation using pybel, I would like to reset the stereochemistry. Even after hydrogen deletion, the E/Z stereochemistry is conserved. Is there any way to reset the stereo? I checked the wiki, but did not fund this kind of function. Thanks, Regards, Pascal --