Re: [Open Babel] Remove redundant conformers

2017-11-15 Thread Noel O'Boyle
Not directly, I'm afraid. The code is in there - this exact functionality is used by Confab and so it should not be too hard to expose, but it's not available at the moment. Do you want to file a feature request at the issue tracker (https://github.com/openbabel/openbabel/issues)? In its absence,

[Open Babel] Remove redundant conformers

2017-11-07 Thread MD Simulation
Hello, I have about 100 conformers. Some of those are similar based on RMSD when looked at in VMD. I would like to eliminate redundant conformers based on RMSD. Is there a way to do that within Open Babel? Thanks Carrie --