Re: [Open Babel] Reading XTC format does not seem to work

2011-08-10 Thread Martin Kamp Jensen
On Tue, Jul 19, 2011 at 12:43 PM, Noel O'Boyle wrote: > On 19 July 2011 11:34, Martin Kamp Jensen > wrote: > > On Tue, Jul 19, 2011 at 11:13 AM, Noel O'Boyle > wrote: > >> > >> We really could do with a MD guy on the team. Hint hint. It might just > >> take a few minutes to patch up xtcformat.c

Re: [Open Babel] Reading XTC format does not seem to work

2011-07-19 Thread Martin Kamp Jensen
On Tue, Jul 19, 2011 at 12:43 PM, Noel O'Boyle wrote: > On 19 July 2011 11:34, Martin Kamp Jensen > wrote: > > On Tue, Jul 19, 2011 at 11:13 AM, Noel O'Boyle > wrote: > >> > >> We really could do with a MD guy on the team. Hint hint. It might just > >> take a few minutes to patch up xtcformat.c

Re: [Open Babel] Reading XTC format does not seem to work

2011-07-19 Thread Noel O'Boyle
On 19 July 2011 11:34, Martin Kamp Jensen wrote: > On Tue, Jul 19, 2011 at 11:13 AM, Noel O'Boyle wrote: >> >> We really could do with a MD guy on the team. Hint hint. It might just >> take a few minutes to patch up xtcformat.cpp. Nudge nudge. :-) > > I'm not an MD guy, I'm not even a biochemist.

Re: [Open Babel] Reading XTC format does not seem to work

2011-07-19 Thread Martin Kamp Jensen
On Tue, Jul 19, 2011 at 11:13 AM, Noel O'Boyle wrote: > We really could do with a MD guy on the team. Hint hint. It might just > take a few minutes to patch up xtcformat.cpp. Nudge nudge. :-) > I'm not an MD guy, I'm not even a biochemist. I'm just a computer scientist trying to help biochemists

Re: [Open Babel] Reading XTC format does not seem to work

2011-07-19 Thread Noel O'Boyle
We really could do with a MD guy on the team. Hint hint. It might just take a few minutes to patch up xtcformat.cpp. Nudge nudge. :-) On 18 July 2011 13:50, Martin Kamp Jensen wrote: > Hello, > I am trying to read an XTC file generated by GROMACS with no luck. > > From the command line, >> >> oba

[Open Babel] Reading XTC format does not seem to work

2011-07-18 Thread Martin Kamp Jensen
Hello, I am trying to read an XTC file generated by GROMACS with no luck. >From the command line, obabel path/totraj.xtc -O test.pdb results in *** Open Babel Warning in OpenBabel::XTCFormat::ReadMolecule > Error: number of atoms in the trajectory (X) doesn't match the number of > atoms in