Re: [Open Babel] Pybel: smi is not a recognised Open Babel format

2017-07-24 Thread Stefano Forli
(apologies: this was a reply to the discussion Re: [Open Babel] Put atoms of target molecule in same order as reference clicked on the wrong email). On 07/24/2017 09:59 AM, Stefano Forli wrote: We've been using this method [1] from an old post in Noel's blog, and it was quite successful. Y

Re: [Open Babel] Pybel: smi is not a recognised Open Babel format

2017-07-24 Thread Stefano Forli
We've been using this method [1] from an old post in Noel's blog, and it was quite successful. You might have to massage your structures a bit if they're distorted and bond order perception gets different results between input and reference, but overall it works pretty well. Needless to say,

Re: [Open Babel] Pybel: smi is not a recognised Open Babel format

2017-07-23 Thread Noel O'Boyle
Not sure, but just so you know, you will need a different wheel for each version of Python you wish to support. Since it works for you with a normal build and install, why not just copy the relevant .so files out of the install and then use them to create your wheel. That's how I create the wheels

Re: [Open Babel] Pybel: smi is not a recognised Open Babel format

2017-07-17 Thread Oliver Stueker
(The previous email was sent accidentally while I was still composing) Dear Open Babel developers and community, I'm currently trying to build a pre-compiled Python wheel for Open Babel 2.4.1 that is to be installed on Compute Canada's HPC clusters so that users can quickly install tested python

[Open Babel] Pybel: smi is not a recognised Open Babel format

2017-07-17 Thread Oliver Stueker
Dear Open Babel developers and community, I'm currently trying to build a Python wheel for Open Babel 2.4.1 $ *module load openbabel python/2.7.13* $ *module list* Currently Loaded Modules: 1) nixpkgs/16.09 (S) 5) intel/2016.4(t) 7) openmpi/2.1.1 (m) 2) icc/.2016.4.258 (H)