Re: [Open Babel] Problem when a fasta file was converted into PDB file

2012-06-09 Thread Geoff Hutchison
> It is a protein, but the retrieved PDB was DNA structure. You don't say what version of Open Babel you're using. Looking at the current code for fastaformat.cpp, it should accept: >protein >peptide >Protein >Peptide -Geoff

[Open Babel] Problem when a fasta file was converted into PDB file

2012-06-09 Thread yookeee
Dear Madam or Sir, When I used Openbabel to convert a fasta file into PDB format, I met a problem. My fasta file is like >protein A It is a protein, but the retrieved PDB was DNA structure. How could I restrain the input parameters to output a protein structure? Thank you very much!! your sinc