Re: [Open Babel] Openbabel 2.4.1 reading MOL file with radicals failed

2018-05-02 Thread Noel O'Boyle
There is a more recent build of the docs at https://open-babel.readthedocs.io/en/latest/, but it really should be available on our main website. On 27 April 2018 at 01:49, dfjk-123 wrote: > Thanks for your reply. > When I read openbabel document, I just find the 2.3.1 version. ( > http://openba

Re: [Open Babel] Openbabel 2.4.1 reading MOL file with radicals failed

2018-05-02 Thread Noel O'Boyle
In relation to the original question, I've just checked, and the current behaviour of Open Babel is in keeping with the current behaviour of BIOVIA Draw, the inheritors of the MOL file format. Regards, - Noel On 29 April 2018 at 08:06, Noel O'Boyle wrote: > There is a more recent build of the d

Re: [Open Babel] Openbabel 2.4.1 reading MOL file with radicals failed

2018-04-26 Thread dfjk-123
Thanks for your reply. When I read openbabel document, I just find the 2.3.1 version. (http://openbabel.org/docs/current/ ) So, where can I get the document of 2.4.1? Best, Baohua At 2018-04-26 22:16:44, "Craig James" wrote: The problem is that there is no "correct" answer to your question

Re: [Open Babel] Openbabel 2.4.1 reading MOL file with radicals failed

2018-04-26 Thread Craig James
The problem is that there is no "correct" answer to your question. The specifications for the MOL format doesn't include a clear definition of the assumed valence of each atomic element. So when you specify 5 hydrogens in the file instead of six, but no "M RAD" line, does it mean it's a radical? Or

[Open Babel] Openbabel 2.4.1 reading MOL file with radicals failed

2018-04-26 Thread 张宝花
Hi, there Now, I'm using openbabel 2.4.1 to convert MOL file with radicals to SMILES. According to the openbabel document, I use the example showed in this page (http://openbabel.org/docs/2.3.0/Features/Radicals.html), but when I try to convert the MOL file with explicit hydrogen to SMILES,

[Open Babel] Openbabel 2.4.1 reading MOL file with radicals failed

2018-04-25 Thread dfjk-123
Hi, there Now, I'm using openbabel 2.4.1 to convert mol file with radicals to smiles. Accordting to the openbabel document, I use the exmaple showed in this page (http://openbabel.org/docs/2.3.0/Features/Radicals.html), but when I try to convert the MOL file with explicit hydrogen to SMILES