Re: [Open Babel] Fwd: debug openbabel

2011-12-11 Thread Geoff Hutchison
> Seems like the debugger is looking for files located on ghutchis's computer. > How do I create and link the .o files myself? Do I need to make modifications > to CMakeLists.txt file? Are you trying to link against the binary install of libopenbabel.dylib? If so, it's built for "-g -O2" flags.

Re: [Open Babel] Fwd: debug openbabel

2011-12-10 Thread Eric Jang
Sorry again for the incessant emails - I just realized that some working programs can be debugged even if .o files are missing. I was just entering the commands wrong: I can pass args to the gdb like this: SYSTEM-PROCESSx32:bin Eric$ gdb --args obenergy -ff GAFF /Users/Eric/Desktop/ExampleMolecul

Re: [Open Babel] Fwd: debug openbabel

2011-12-10 Thread Eric Jang
Oops, I spoke too soon. Turns out that obenergy.cpp prints its promo message correctly but I think I need to compile all of the .o object files that get linked into obenergy as debuggable as well. I'm not sure how to re-link the .o files though, because I get lots of errors like these: warning: Co

Re: [Open Babel] Fwd: debug openbabel

2011-12-10 Thread Eric Jang
Hello, I haven't been able to get the XCode generator to work, but what I found is that if I follow the standard build instructions using cmake: mv openbabel-2.3.0 ob-src mkdir ob-build cd ob-build cmake ../ob-src 2>&1 | tee cmake.out make 2>&1 | tee make.out I find that the executables are debu

Re: [Open Babel] Fwd: debug openbabel

2011-11-28 Thread Noel O'Boyle
Well, it's supposed to work. :-/ It's either a CMake bug, or a problem with our setup somehow. If you go through the generated xcodeproj file, you might be able to figure it out the origin of the problem. Otherwise, my only advice is to make sure you use the latest version of CMake - perhaps there

[Open Babel] Fwd: debug openbabel

2011-11-27 Thread Eric Jang
-- Forwarded message -- From: Eric Jang Date: Sat, Nov 26, 2011 at 8:03 PM Subject: Re: [Open Babel] debug openbabel To: Noel O'Boyle I ran cmake -G Xcode ../openbabel-2.3.1 and it produced the xcodeproj file. However when I try to open the file, it says that XCode cannot open b