Re: [Open Babel] Disabled aromaticity conversion in SMILES

2012-04-16 Thread Noel O'Boyle
gt; ** ** > > Regards, > > Camille Gardet > > ** ** > > *De :* Noel O'Boyle [mailto:baoille...@gmail.com] > *Envoyé :* jeudi 12 avril 2012 17:49 > *À :* Camille Gardet > *Cc :* openbabel-discuss@lists.sourceforge.net > *Objet :* Re: [Open Babel] Disabled aromatici

Re: [Open Babel] Disabled aromaticity conversion in SMILES

2012-04-12 Thread Noel O'Boyle
There's no option to disable it I'm afraid. - Noel On 12 April 2012 14:58, Camille Gardet wrote: > Hello, > > ** ** > > Actually, OpenBabel add aromaticity in SMILES, eg : > > ** ** > > This SMILES : C1=CC2C=CC3CC=CC4C=CC(=C1)C=2C=34 > > Is convert into : c1cc2ccc3CC=CC4C=Cc(c1)c2c3

[Open Babel] Disabled aromaticity conversion in SMILES

2012-04-12 Thread Camille Gardet
Hello, Actually, OpenBabel add aromaticity in SMILES, eg : This SMILES : C1=CC2C=CC3CC=CC4C=CC(=C1)C=2C=34 Is convert into : c1cc2ccc3CC=CC4C=Cc(c1)c2c34 I've already tried the option "-ocan" but aromaticity is still in : C1=CC2C=Cc3c4c2c(C1)ccc4ccc3 Is there any option/flag to use