Re: [Open Babel] Desprotonated Molecules

2023-09-20 Thread Geoffrey Hutchison
> > I'm a PhD student. In my research, I'm using Obabel and have a problem > with this. After converting the molecules to physiological pH, deprotonated > molecules are not obtained in phosphate groups. > I’m not sure if I understand. Basically, you want a tool that’s going to adjust protonation f

[Open Babel] Desprotonated Molecules

2023-09-20 Thread María Virginia Chaulet
I'm a PhD student. In my research, I'm using Obabel and have a problem with this. After converting the molecules to physiological pH, deprotonated molecules are not obtained in phosphate groups. Is there a solution for this? Does a script exist for this? I hope that somebody can help me. Virginia