Re: [Open Babel] Converting from compound names in OpenBabel

2011-12-13 Thread Geoffrey Hutchison
> Very cool! :-) I'd be for having this in Open Babel. In fact, I think > you should also consider it as an output format. Indeed, this would be a nice test of "roundtripping" names. :-) > Regarding the specifics, I'm just wondering whether the format should > be renamed to include the word "web"

Re: [Open Babel] Converting from compound names in OpenBabel

2011-12-09 Thread Noel O'Boyle
Very cool! :-) I'd be for having this in Open Babel. In fact, I think you should also consider it as an output format. In Cinfony, I use the CIR to return 1 or multiple names for a compound (could be controlled by an output option), or the IUPAC name. Regarding the specifics, I'm just wondering wh

[Open Babel] Converting from compound names in OpenBabel

2011-12-07 Thread Chris Morley
Reminded by a question on Blue Obelisk Exchange (http://blueobelisk.shapado.com/questions/converting-from-compound-name-to-chemical-structure), I have tweaked up some code to access the NIH Chemical Identifier Resolver from an input format in OpenBabel. There must be doubts as to whether this s