Re: [Open Babel] Command line help for protonation

2016-08-08 Thread Pascal Muller
> > > > I’m using Open Babel 2.3.2. on a Windows 10 system. > > > > Stuart > > > > *From:* Geoffrey Hutchison [mailto:geoff.hutchi...@gmail.com] > *Sent:* Friday, August 05, 2016 12:40 PM > *To:* Stuart Ember > *Cc:* Pascal Muller; babel > *Subject:*

Re: [Open Babel] Command line help for protonation

2016-08-05 Thread Stuart Ember
Hi Geoff, I'm using Open Babel 2.3.2. on a Windows 10 system. Stuart From: Geoffrey Hutchison [mailto:geoff.hutchi...@gmail.com] Sent: Friday, August 05, 2016 12:40 PM To: Stuart Ember Cc: Pascal Muller; babel Subject: Re: [Open Babel] Command line help for protonation Can you or anyone

Re: [Open Babel] Command line help for protonation

2016-08-05 Thread Geoffrey Hutchison
> Can you or anyone else think of what the problem may be? No. It would certainly help if you gave more information on what platform (OS) you're using and the version of Open Babel. -Geoff -- ___

Re: [Open Babel] Command line help for protonation

2016-08-05 Thread Stuart Ember
] Command line help for protonation Hi Stuart, I have you tried removing the space between the "-p" flag and the value, like "-p7.4"? Best, Miro -- Edelmiro Moman, PhD Department of Molecular Medicine Royal College of Surgeons in Ireland POSTAL ADDRESS: L5.08 Trinity Biomedica

Re: [Open Babel] Command line help for protonation

2016-08-05 Thread Stuart Ember
anyone else think of what the problem may be? Stuart From: Pascal Muller [mailto:pascal.jm.mul...@gmail.com] Sent: Friday, August 05, 2016 4:21 AM To: Stuart Ember Cc: babel Subject: Re: [Open Babel] Command line help for protonation Hi, I am a new user and would like to use OpenBabel in order

Re: [Open Babel] Command line help for protonation

2016-08-05 Thread Miro Moman
Hi Stuart, I have you tried removing the space between the "-p" flag and the value, like "-p7.4"? Best, Miro -- Edelmiro Moman, PhD Department of Molecular Medicine Royal College of Surgeons in Ireland POSTAL ADDRESS: L5.08 Trinity Biomedical Sciences Institute - TBSI Trinity College Dublin

Re: [Open Babel] Command line help for protonation

2016-08-05 Thread Pascal Muller
Hi, > I am a new user and would like to use OpenBabel in order to perform the > following tasks on a small molecule (let's say the starting point is a > molecule represented as a smiles string). I'm having some difficulty with > the third step and would really appreciate some help from you vete

[Open Babel] Command line help for protonation

2016-08-04 Thread Stuart
Dear OpenBabel community, I am a new user and would like to use OpenBabel in order to perform the following tasks on a small molecule (let's say the starting point is a molecule represented as a smiles string). I'm having some difficulty with the third step and would really appreciate some help fr