Re: [Open Babel] Setting stereochemistry with Python openbabel

2012-10-24 Thread Wim Vranken
Hi, A while back, Tim, you kindly introduced some Python bindings to set bond stereochemistry. I tried to compile openbabel from SVN afterwards, but didn't succeed, and let it lie for a while. I've now re-attempted compilation after updating svn (trunk) using cmake version 2.6-patch 4, gcc 4.1

[Open Babel] Setting stereochemistry with Python openbabel

2012-07-30 Thread Wim Vranken
Hi all, I've been using the Python openbabel module to create atomic coordinates based on molecule/bond information for mostly modified amino acids; this is all working fine except that I'm struggling to set the stereochemistry (and generate, for example, the correct cis/trans peptide bonds).