Re: [Open Babel] building openbabel with no root access

2017-10-16 Thread Sundar Jubilant
I found the respective section and it worked all well. Thanks Jubilant > On Oct 16, 2017, at 2:02 PM, Dimitri Maziuk wrote: > >> On 10/16/2017 01:50 PM, Noel O'Boyle wrote: >> Have you read the section in the docs that describes how to do that? > > I suspect the issue that if gcc and all req

Re: [Open Babel] building openbabel with no root access

2017-10-16 Thread Dimitri Maziuk
On 10/16/2017 01:50 PM, Noel O'Boyle wrote: > Have you read the section in the docs that describes how to do that? I suspect the issue that if gcc and all required development libraries aren't already installed, setting it all up in your home directory is a major PITA. And you may run out of disk

Re: [Open Babel] building openbabel with no root access

2017-10-16 Thread Noel O'Boyle
Have you read the section in the docs that describes how to do that? On 16 Oct 2017 7:35 p.m., "Sundar" wrote: > Hi, > > I would like to build openbabel in a local folder on a linux machine. I > don't have root access to this machine. > Help me out with it. > > -Jubilant > >

[Open Babel] building openbabel with no root access

2017-10-16 Thread Sundar
Hi, I would like to build openbabel in a local folder on a linux machine. I don't have root access to this machine. Help me out with it. -Jubilant -- Check out the vibrant tech community on one of the world's most engagin

Re: [Open Babel] Define origin for ECFP2 fingerprints

2017-10-16 Thread Maciek Wójcikowski
Hi Marcos, There is no straightforward way to do it OpenBabel, I've recentrly developed such fingerprint (Protein-Ligand Extended Connectivity FP) and presented it on RDKit UGM https://github.com/rdkit/UGM_2017/blob/master/Posters/Wojcikowski-PLEC_fingerprint.pdf PLEC Basically is what you've su

[Open Babel] Define origin for ECFP2 fingerprints

2017-10-16 Thread Marcos Vinicius Da Silva Santana
Is it possible to calculate circular fingerprints around a predefined atom/atom-pair? For example, I'm using a PDB file containing a ligand (LIG) showing a nitrogen atom (e.g. N) that interacts with an oxygen atom of a serine residue (let's call it OG). What I want is to generate a circular finge