Re: [Open Babel] Two smi conversion problems

2014-03-17 Thread Scott McKechnie
I originally used "C=0" but using "[C-]#[O+]" gives the following roundtrip for me: [C-]#[O+] -> SDF -> [C-]#[OH] Since writing the above I tried installing the latest version of Open Babel and using "C=0" now gives an error and using "[C-]#[O+]" gives the correct result. Thanks for the help with

[Open Babel] Question about Conformer Search

2014-03-17 Thread Torsten Sachse
Dear users of openbabel, I am trying to generate conformers using openbabel. After trying confab, which takes rather long for large molecules, I tried the genetic algorithm and got really nice results. However, when I was testing different scoring methods I noticed that the results I obtai