Re: [Open Babel] wavy bonds

2012-08-20 Thread Igor Filippov
Tim, Thanks - this is what I need! I am going to save wavy bonds in sd file for structures recognized by osra. Having setWavy() wrapper would be great too. By the way I am at the ACS meeting, are you here as well? Igor On Aug 20, 2012 10:23 AM, "Tim Vandermeersch" wrote: > On Mon, Aug 20, 2012

Re: [Open Babel] wavy bonds

2012-08-20 Thread Tim Vandermeersch
On Mon, Aug 20, 2012 at 4:12 PM, Tim Vandermeersch wrote: > On Mon, Aug 20, 2012 at 4:08 PM, Tim Vandermeersch > wrote: >> On Mon, Aug 20, 2012 at 3:18 PM, Igor Filippov >> wrote: >>> Noel, >>> >>> Thank you - could you give just a few lines example how to do this? >>> I looked at the suggested

Re: [Open Babel] wavy bonds

2012-08-20 Thread Tim Vandermeersch
On Mon, Aug 20, 2012 at 4:08 PM, Tim Vandermeersch wrote: > On Mon, Aug 20, 2012 at 3:18 PM, Igor Filippov > wrote: >> Noel, >> >> Thank you - could you give just a few lines example how to do this? >> I looked at the suggested header file and I'm still stumped :( > > The code to set an atom's te

Re: [Open Babel] wavy bonds

2012-08-20 Thread Tim Vandermeersch
On Mon, Aug 20, 2012 at 3:18 PM, Igor Filippov wrote: > Noel, > > Thank you - could you give just a few lines example how to do this? > I looked at the suggested header file and I'm still stumped :( The code to set an atom's tetrahedral stereochemistry to unknown goes something like this: #inclu

Re: [Open Babel] wavy bonds

2012-08-20 Thread Igor Filippov
Noel, Thank you - could you give just a few lines example how to do this? I looked at the suggested header file and I'm still stumped :( Igor On Sun, 2012-08-19 at 05:48 -0400, Noel O'Boyle wrote: > You can set the corresponding stereo config to defined=false. > Internally stereo is not stored a