> I believe that 'obrotate' is determining the atom numbers from the SMART
> pattern, and this becomes a problem when the atom numbers in 'obrotate' don't
> match the atom numbers from the XYZ generated by babel. In the first example
> (isoleucine), there are two explicit hydrogens that obrotat
> It would be nice to have the internal coordinate format for qchem included.
Sorry for the delay. I think you're asking to specify internal coordinates for
qchem input?
Thanks,
-Geoff
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