[Open Babel] Gasteiger-Marsili partial charge calculation

2011-09-07 Thread Lan-Chun Tu
To whom it may concern, I am trying to calculate Gasteiger-Marsili partial charge for a compound. I have installed the windows version of OpenBabelGUI and I found assign Gasteiger-Marsili sigma partial charges in the plugins. However, I have no idea how to make the plugin work. How do I use thi

Re: [Open Babel] SDF conversion error

2011-09-07 Thread DavidFlicker
Hey Dan, I just tried redownloading the sdf from here: http://dtp.nci.nih.gov/branches/dscb/natprod_explanation2.html and I get this file http://dtp.nci.nih.gov/branches/dscb/natprod_ii_aug11.sdf which seems to be the same one as before. Is this indeed the latest one? I just want to make sure s

Re: [Open Babel] SDF conversion error

2011-09-07 Thread Daniel Zaharevitz
On Aug 11, 2011, at 2:21 PM, David Flicker wrote: > Thanks for all the help. > > I redownloaded the Diversity Set II, the Natural Products Set II, and the FDA > approved oncology drugs sets from the DTP website. It seems that only the > Natural Products one has a bad SDF and returns the bond c