Thanks for all the help.
I redownloaded the Diversity Set II, the Natural Products Set II, and the
FDA approved oncology drugs sets from the DTP website. It seems that only
the Natural Products one has a bad SDF and returns the bond count error.
However, both of the FDA approved SDF's cause OpenB
On Aug 10, 2011, at 8:24 PM, Geoff Hutchison wrote:
>
> On Aug 10, 2011, at 7:36 PM, Craig A. James wrote:
>
>> Sometimes you get this problem if your file has a mixture of Windows (CRLF)
>> line endings and Unix/Linix (LF only) line endings. The files look fine in
>> a text editor, but actu
