Re: [Open Babel] Apache+Openbabel Problem

2011-03-22 Thread Geoffrey Hutchison
On Mar 16, 2011, at 1:39 AM, 討僖哓醜 wrote: > We develop the website with django under Windows. When I use django's > runserver to run the site, pybel is working properly; while use > apache+mod_wsgi to run the site, the following errors occurred: > Traceback: > File "D:\Python\lib\site-packages\

[Open Babel] what does --gen3d do under the hood

2011-03-22 Thread hari jayaram
Hi, I am using the babel -ismi inputfile.smi -osdf --gen3d output_3d_sdf.sdf Or the OBGUI with just " output 3D coodinates" checked , to generate 3d structures from a smiles string. What is the procedure used in openbabel to generate the 3d structure from smiles string. Does it use the UFF f

Re: [Open Babel] (no subject)

2011-03-22 Thread JP
Right - but you forgot to mention the OS you are using (architecture and version please) On 22 March 2011 17:15, wrote: > > Dong Li > > > > -- > Enable your software for Intel(R) Active Management Technology to meet the

[Open Babel] (no subject)

2011-03-22 Thread dong_li3
Dong Li -- Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro (TM) technology - will

Re: [Open Babel] how to access getAlias() in perl

2011-03-22 Thread Igor Filippov [Contr]
Noel, Thank you. I'm getting the following error though: TypeError in method 'toSetData', argument 1 of type 'OpenBabel::OBGenericData *' Does it mean that the argument should not be an object returned by GetData()? What should it be then? Best regards, Igor On Tue, 2011-03-22 at 05:26 -0400,

Re: [Open Babel] openbabel comparison ... sp3 stereochemistry

2011-03-22 Thread Geoffrey Hutchison
On Mar 19, 2011, at 3:09 PM, nms_uk wrote: > What about when it says they have different double bond stereochemistry? Double bond stereochemistry refers to cis vs. trans (or E vs. Z) isomers around a double bond. Hope that helps, -Geoff -

Re: [Open Babel] how to access getAlias() in perl

2011-03-22 Thread Noel O'Boyle
You need to cast it to the specific subclass first. Try calling $newad = toSetData($ad) and then if ($newad && $newad->GetAlias() eq "Xx") - Noel On 21 March 2011 15:06, Igor Filippov [Contr] wrote: > Dear Colleagues, > > I need to implement in Perl a procedure which is C++ looks like the > foll

Re: [Open Babel] openbabel comparison ... sp3 stereochemistry

2011-03-22 Thread nms_uk
What about when it says they have different double bond stereochemistry? Thanks -- View this message in context: http://forums.openbabel.org/openbabel-comparison-sp3-stereochemistry-tp3382484p3390130.html Sent from the General discussion mailing list archive at Nabble.com. -