Re: [Open Babel] Need help in Modifying Tanimoto coefficient

2011-02-01 Thread Imran Haque
On 02/01/2011 05:37 AM, Daniel Zaharevitz wrote: > We will be > looking to find a set of fingerprints that > 1) never (or as close to never as we can get) return a value of 1.0 > for different structures. I'm not sure that's it's implemented in OpenBabel, but if it's a 2D structural descriptor yo

Re: [Open Babel] Need help in Modifying Tanimoto coefficient

2011-02-01 Thread Daniel Zaharevitz
On Feb 1, 2011, at 4:49 AM, Chris Morley wrote: > On 01/02/2011 07:12, Andrew Dalke wrote: >> On Jan 31, 2011, at 8:15 PM, chakravar...@ncbs.res.in wrote: >>> I noticed that molecules such as Myristic acid and Palmitic acid >>> have same >>> similarity score of 1, >> ... >>> I am thinking of m

Re: [Open Babel] canonical SMILES question

2011-02-01 Thread Tim Vandermeersch
On Mon, Jan 31, 2011 at 10:28 AM, SALDANA MIRANDA Diego wrote: > Hi, > > I would like to know if there is an article or a page explaining the > conversion to canonical SMILES in detail, I would like to reference it in an > article. There is no paper describing the algorithm in detail (yet). Howev

Re: [Open Babel] Need help in Modifying Tanimoto coefficient

2011-02-01 Thread Chris Morley
On 01/02/2011 07:12, Andrew Dalke wrote: > On Jan 31, 2011, at 8:15 PM, chakravar...@ncbs.res.in wrote: >> I noticed that molecules such as Myristic acid and Palmitic acid have same >> similarity score of 1, > ... >> I am thinking of modifying Tanimoto score to other coefficient's like >> Kulczy

[Open Babel] canonical SMILES question

2011-02-01 Thread SALDANA MIRANDA Diego
Hi, I would like to know if there is an article or a page explaining the conversion to canonical SMILES in detail, I would like to reference it in an article. Thank you very much, Diego Saldana __ Notre adresse de messagerie évolue pour plus de simplicité vers : preno