Re: [Open Babel] SMARTS to SMILES

2009-11-10 Thread Craig A. James
Vinay, > Thanks a lot, could you please send me the C or C++ code, > since it deal with it a lot. I will follow those in perl and try. Thanks > a lot. You're welcome, but I can't do it in C or C++. It would take days to do the same thing. Perl has very powerful string-handling f

[Open Babel] SMARTS to SMILES

2009-11-10 Thread Vinay M
Hi Craig, Thanks a lot, could you please send me the C or C++ code, since it deal with it a lot. I will follow those in perl and try. Thanks a lot. __ Looking for the perfect gift? Give the gift of Flickr! http

Re: [Open Babel] SMARTS to SMILES

2009-11-10 Thread Craig A. James
Vinay, Thanks for your reply, i was using smiles to view the structure, so few are in smarts. I just wanted to convert smiles to smarts and smarts to smiles. Ok, now that I know what you're doing, I can suggest a possible way to do it, but it's not easy. Attached is a little P

Re: [Open Babel] SMARTS to SMILES

2009-11-10 Thread Vinay M
Hi    Thanks a lot for your reply. I then use smiles for SMARTS. Vinay --- On Tue, 11/10/09, Geoffrey Hutchison wrote: From: Geoffrey Hutchison Subject: Re: [Open Babel] SMARTS to SMILES To: "Vinay M" Cc: "babel" Received: Tuesday, November 10, 2009, 8:55 PM >               Thanks for you

Re: [Open Babel] SMARTS to SMILES

2009-11-10 Thread Geoffrey Hutchison
> Thanks for your reply, i was using smiles to view the > structure, so few are in smarts. I just wanted to convert smiles to smarts > and smarts to smiles. SMILES is a subset of SMARTS, so any SMILES string can be used as a SMARTS. The reverse is not true. I can design many SMAR

[Open Babel] SMARTS to SMILES

2009-11-10 Thread Vinay M
Hi     Craig,   Thanks for your reply, i was using smiles to view the structure, so few are in smarts. I just wanted to convert smiles to smarts and smarts to smiles. Thanks Kindly help  With Warm regards Vinay    --- On Tue, 11/10/09, Craig A. James wrote: From: Craig A. James

Re: [Open Babel] SMARTS to SMILES

2009-11-10 Thread Craig A. James
Vinay M wrote: > Can anyone help to know, how to convert from SMARTS to SMILES. You can't. SMARTS is a superset of SMILES, and most SMARTS are not valid SMILES. Perhaps if you explain why you need to do this, we might be able to suggest a solution. Craig --

[Open Babel] SMARTS to SMILES

2009-11-10 Thread Vinay M
Hi    Can anyone help to know, how to convert from SMARTS to SMILES. Thanks  With Warm Regards Vinay __ Ask a question on any topic and get answers from real people. Go to Yahoo! Answers and share what you know at http://c

Re: [Open Babel] MSVCR80.dll error

2009-11-10 Thread Tim Vandermeersch
On Tue, Nov 10, 2009 at 4:21 PM, Tim Vandermeersch wrote: > On Fri, Nov 6, 2009 at 11:43 PM, Rob Soe wrote: >> Hi all, >> >> I have been reading quite a lot for this MSVCR80.dll error and here is what >> I found at: >> >> http://www.instant-registry-fixes.org/why-do-i-keep-receiving-msvcr80dll-mi

Re: [Open Babel] MSVCR80.dll error

2009-11-10 Thread Tim Vandermeersch
On Fri, Nov 6, 2009 at 11:43 PM, Rob Soe wrote: > Hi all, > > I have been reading quite a lot for this MSVCR80.dll error and here is what > I found at: > > http://www.instant-registry-fixes.org/why-do-i-keep-receiving-msvcr80dll-missing-errors/ > > "If an application is unable to reach the dll in

[Open Babel] Is RXN format is still supported

2009-11-10 Thread Charlie Zhu
Hi, I have tested a few RXN files on Openbabel GUI on Windows but 0 result has been output. One of the RXN file is attached. I temporarily have to use Regexp to parse the RXN format to SDF as C# code as pasted below. It is even not trusted by myself. f = Regex.Replace(f, "\\$RXN(.

Re: [Open Babel] installing open babel on cygwin failed

2009-11-10 Thread Noel O'Boyle
Hello Jana, I'm afraid that building OB on cygwin currently is broken (and has been for a long time). Some work was done on fixing it but problems remain. Is there some particular reason you require a cygwin build? - Noel 2009/11/6 Jana Kneslova : > Hello, > > I tried to install open babel versi

Re: [Open Babel] MSVCR80.dll error

2009-11-10 Thread Noel O'Boyle
Roe - there's something different about your setup compared to mine. Could you specify your OS, what exact version of MSVC++ you're using, whether you're building the trunk or the branch, and whether you're using Cmake or not. In general, these MS DLLs are available through VC++ redistributable pa