[jira] [Created] (CTAKES-424) Dictionary Creation GUI

Sean Finan created CTAKES-424: - Summary: Dictionary Creation GUI Key: CTAKES-424 URL: https://issues.apache.org/jira/browse/CTAKES-424 Project: cTAKES Issue Type: New Feature Components

[jira] [Created] (CTAKES-425) Ctakes Pipeline Creator GUI

Sean Finan created CTAKES-425: - Summary: Ctakes Pipeline Creator GUI Key: CTAKES-425 URL: https://issues.apache.org/jira/browse/CTAKES-425 Project: cTAKES Issue Type: New Feature Compon

[jira] [Created] (CTAKES-426) simple pipeline description files

Sean Finan created CTAKES-426: - Summary: simple pipeline description files Key: CTAKES-426 URL: https://issues.apache.org/jira/browse/CTAKES-426 Project: cTAKES Issue Type: New Feature

[jira] [Created] (CTAKES-429) Upgrade all dictionary databases to hsqldb 2.3

Sean Finan created CTAKES-429: - Summary: Upgrade all dictionary databases to hsqldb 2.3 Key: CTAKES-429 URL: https://issues.apache.org/jira/browse/CTAKES-429 Project: cTAKES Issue Type: Improveme

[jira] [Resolved] (CTAKES-426) simple pipeline description files

[ https://issues.apache.org/jira/browse/CTAKES-426?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-426. --- Resolution: Implemented Piper Files have been in trunk for several months. PiperFileReader, PiperFil

[jira] [Resolved] (CTAKES-425) Ctakes Pipeline Creator GUI

[ https://issues.apache.org/jira/browse/CTAKES-425?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-425. --- Resolution: Implemented A new gui exists that can create, validate, and run piper files. It is bare

[jira] [Resolved] (CTAKES-424) Dictionary Creation GUI

[ https://issues.apache.org/jira/browse/CTAKES-424?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-424. --- Resolution: Fixed The gui to create dictionary databases has been moved from sandbox to trunk. It ha

[jira] [Assigned] (CTAKES-429) Upgrade all dictionary databases to hsqldb 2.3

[ https://issues.apache.org/jira/browse/CTAKES-429?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-429: - Assignee: James Joseph Masanz Hi James, I think that you said this was done. I just want to make

[jira] [Commented] (CTAKES-373) MaxentParserWrapper can't handle section dividers: "=========="

[ https://issues.apache.org/jira/browse/CTAKES-373?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959132#comment-15959132 ] Sean Finan commented on CTAKES-373: --- There is also a capability within the RegexSectioni

[jira] [Closed] (CTAKES-349) JdbcWriterTemplate does not store rows if there are fewer than 100 per note

[ https://issues.apache.org/jira/browse/CTAKES-349?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-349. - Assignee: Sean Finan 2 years of testing. > JdbcWriterTemplate does not store rows if there are fewer than

[jira] [Closed] (CTAKES-164) UMLS password could not be set in shell as ctakes.umlspw

[ https://issues.apache.org/jira/browse/CTAKES-164?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-164. - Assignee: Sean Finan 4 years of testing. > UMLS password could not be set in shell as ctakes.umlspw > ---

[jira] [Closed] (CTAKES-127) Dependency Parser name includes full path in xmls

[ https://issues.apache.org/jira/browse/CTAKES-127?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-127. - Assignee: Sean Finan 4 years of testing > Dependency Parser name includes full path in xmls > ---

[jira] [Closed] (CTAKES-126) On MS command prompt testing different versions with the CPE leads to errors as the first CTAKES_HOME sticks

[ https://issues.apache.org/jira/browse/CTAKES-126?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-126. - Assignee: Sean Finan 4 years of testing. > On MS command prompt testing different versions with the CPE l

[jira] [Closed] (CTAKES-120) Inconsistent or missing paths for AE and CPE directories

[ https://issues.apache.org/jira/browse/CTAKES-120?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-120. - Assignee: Sean Finan 4 years of testing. > Inconsistent or missing paths for AE and CPE directories > ---

[jira] [Closed] (CTAKES-118) Location of CPE Descriptor not changed in 3.1 update

[ https://issues.apache.org/jira/browse/CTAKES-118?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-118. - Assignee: Sean Finan 4 years of testing. > Location of CPE Descriptor not changed in 3.1 update > ---

[jira] [Reopened] (CTAKES-373) MaxentParserWrapper can't handle section dividers: "=========="

[ https://issues.apache.org/jira/browse/CTAKES-373?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reopened CTAKES-373: --- > MaxentParserWrapper can't handle section dividers: "==" > --

[jira] [Closed] (CTAKES-373) MaxentParserWrapper can't handle section dividers: "=========="

[ https://issues.apache.org/jira/browse/CTAKES-373?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-373. - Resolution: Fixed > MaxentParserWrapper can't handle section dividers: "==" >

[jira] [Updated] (CTAKES-373) MaxentParserWrapper can't handle section dividers: "=========="

[ https://issues.apache.org/jira/browse/CTAKES-373?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-373: -- Fix Version/s: (was: 3.2.3) 4.0.0 > MaxentParserWrapper can't handle section divi

[jira] [Updated] (CTAKES-410) Create cTAKES 3.2.3 Release

[ https://issues.apache.org/jira/browse/CTAKES-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-410: -- Fix Version/s: (was: 3.2.3) 4.0.0 > Create cTAKES 3.2.3 Release > ---

[jira] [Commented] (CTAKES-410) Create cTAKES 3.2.3 Release

[ https://issues.apache.org/jira/browse/CTAKES-410?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959181#comment-15959181 ] Sean Finan commented on CTAKES-410: --- Actual release will be 4.0 > Create cTAKES 3.2.3 R

[jira] [Assigned] (CTAKES-410) Create cTAKES 3.2.3 Release

[ https://issues.apache.org/jira/browse/CTAKES-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-410: - Assignee: James Joseph Masanz > Create cTAKES 3.2.3 Release > --- > >

[jira] [Reopened] (CTAKES-382) Add ability to easily add extension of UmlsConcept Type to jcas via dictionary lookup

[ https://issues.apache.org/jira/browse/CTAKES-382?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reopened CTAKES-382: --- > Add ability to easily add extension of UmlsConcept Type to jcas via > dictionary lookup > -

[jira] [Updated] (CTAKES-382) Add ability to easily add extension of UmlsConcept Type to jcas via dictionary lookup

[ https://issues.apache.org/jira/browse/CTAKES-382?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-382: -- Fix Version/s: (was: 3.2.3) 4.0.0 > Add ability to easily add extension of UmlsCo

[jira] [Closed] (CTAKES-382) Add ability to easily add extension of UmlsConcept Type to jcas via dictionary lookup

[ https://issues.apache.org/jira/browse/CTAKES-382?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-382. - Resolution: Fixed > Add ability to easily add extension of UmlsConcept Type to jcas via > dictionary look

[jira] [Updated] (CTAKES-391) how to get DrugMention information from CAS object

[ https://issues.apache.org/jira/browse/CTAKES-391?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-391: -- Fix Version/s: (was: 3.2.2) 4.0.0 > how to get DrugMention information from CAS o

[jira] [Closed] (CTAKES-391) how to get DrugMention information from CAS object

[ https://issues.apache.org/jira/browse/CTAKES-391?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-391. - Resolution: Fixed Handled on mailing list. > how to get DrugMention information from CAS object > ---

[jira] [Closed] (CTAKES-416) Temporal , Smoking and Side effects

[ https://issues.apache.org/jira/browse/CTAKES-416?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-416. - Resolution: Fixed Handled in mailing list. > Temporal , Smoking and Side effects > --

[jira] [Closed] (CTAKES-349) JdbcWriterTemplate does not store rows if there are fewer than 100 per note

[ https://issues.apache.org/jira/browse/CTAKES-349?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-349. - Resolution: Fixed > JdbcWriterTemplate does not store rows if there are fewer than 100 per note >

[jira] [Updated] (CTAKES-349) JdbcWriterTemplate does not store rows if there are fewer than 100 per note

[ https://issues.apache.org/jira/browse/CTAKES-349?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-349: -- Fix Version/s: (was: 3.2.2) 4.0.0 > JdbcWriterTemplate does not store rows if the

[jira] [Reopened] (CTAKES-349) JdbcWriterTemplate does not store rows if there are fewer than 100 per note

[ https://issues.apache.org/jira/browse/CTAKES-349?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reopened CTAKES-349: --- > JdbcWriterTemplate does not store rows if there are fewer than 100 per note > --

[jira] [Assigned] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM.

[ https://issues.apache.org/jira/browse/CTAKES-151?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-151: - Assignee: Sean Finan > LVG is not thread safe for multiple instances inside of a single JVM. > --

[jira] [Assigned] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM.

[ https://issues.apache.org/jira/browse/CTAKES-151?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-151: - Assignee: James Joseph Masanz (was: Sean Finan) > LVG is not thread safe for multiple instances

[jira] [Updated] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM.

[ https://issues.apache.org/jira/browse/CTAKES-151?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-151: -- Fix Version/s: 4.0.0 > LVG is not thread safe for multiple instances inside of a single JVM. > -

[jira] [Resolved] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM.

[ https://issues.apache.org/jira/browse/CTAKES-151?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-151. --- Resolution: Fixed I believe that the latest lvg is thread safe ... > LVG is not thread safe for multi

[jira] [Commented] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM.

[ https://issues.apache.org/jira/browse/CTAKES-151?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959200#comment-15959200 ] Sean Finan commented on CTAKES-151: --- In addition to the new LVG, there is a new thread-s

[jira] [Assigned] (CTAKES-238) update the umls dictionaries to the latest versions (2013)

[ https://issues.apache.org/jira/browse/CTAKES-238?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-238: - Assignee: Sean Finan (was: Andy McMurry) > update the umls dictionaries to the latest versions (

[jira] [Updated] (CTAKES-238) update the umls dictionaries to the latest versions (2013)

[ https://issues.apache.org/jira/browse/CTAKES-238?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-238: -- Fix Version/s: (was: future enhancement) 4.0.0 > update the umls dictionaries to

[jira] [Commented] (CTAKES-238) update the umls dictionaries to the latest versions (2013)

[ https://issues.apache.org/jira/browse/CTAKES-238?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959210#comment-15959210 ] Sean Finan commented on CTAKES-238: --- ctakes 4.0 will use umls 2016ab by default. Future

[jira] [Resolved] (CTAKES-238) update the umls dictionaries to the latest versions (2013)

[ https://issues.apache.org/jira/browse/CTAKES-238?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-238. --- Resolution: Fixed Needs testing! > update the umls dictionaries to the latest versions (2013) > -

[jira] [Commented] (CTAKES-72) Housekeeping - clean up eclipse launch files

[ https://issues.apache.org/jira/browse/CTAKES-72?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959249#comment-15959249 ] Sean Finan commented on CTAKES-72: -- +1 to remove launch and also eclipse project files >

[jira] [Updated] (CTAKES-72) Housekeeping - clean up eclipse launch files

[ https://issues.apache.org/jira/browse/CTAKES-72?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-72: - Fix Version/s: future enhancement > Housekeeping - clean up eclipse launch files >

[jira] [Updated] (CTAKES-38) Orange Book is not the most recent and lucene index too old

[ https://issues.apache.org/jira/browse/CTAKES-38?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-38: - Priority: Trivial (was: Major) > Orange Book is not the most recent and lucene index too old > ---

[jira] [Commented] (CTAKES-38) Orange Book is not the most recent and lucene index too old

[ https://issues.apache.org/jira/browse/CTAKES-38?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959251#comment-15959251 ] Sean Finan commented on CTAKES-38: -- The old dictionary lookup and its related databases ar

[jira] [Commented] (CTAKES-231) missing NEs because of inconsistent chunking for parallel sentence constructions

[ https://issues.apache.org/jira/browse/CTAKES-231?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959258#comment-15959258 ] Sean Finan commented on CTAKES-231: --- The dictionary-lookup-fast module has an overlap an

[jira] [Updated] (CTAKES-420) Wiki wishlist

[ https://issues.apache.org/jira/browse/CTAKES-420?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-420: -- Fix Version/s: 4.0.0 > Wiki wishlist > - > > Key: CTAKES-420 >

[jira] [Updated] (CTAKES-409) I got AnalysisEngineProcessException, when i tried to convert clinical note to snomed ct using ctakes in multi threaded environment

[ https://issues.apache.org/jira/browse/CTAKES-409?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-409: -- Fix Version/s: 4.0.0 > I got AnalysisEngineProcessException, when i tried to convert clinical note > to

[jira] [Resolved] (CTAKES-409) I got AnalysisEngineProcessException, when i tried to convert clinical note to snomed ct using ctakes in multi threaded environment

[ https://issues.apache.org/jira/browse/CTAKES-409?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-409. --- Resolution: Workaround Vighnesh posted workaround / fix in uima. > I got AnalysisEngineProcessExcepti

[jira] [Updated] (CTAKES-236) Use UmlsConcept instead of OntologyConcept for Drugs

[ https://issues.apache.org/jira/browse/CTAKES-236?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-236: -- Fix Version/s: (was: future enhancement) 4.0.0 > Use UmlsConcept instead of Ontol

[jira] [Resolved] (CTAKES-236) Use UmlsConcept instead of OntologyConcept for Drugs

[ https://issues.apache.org/jira/browse/CTAKES-236?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-236. --- Resolution: Fixed Medications are now umls annotations, and can store cui and tui. > Use UmlsConcept

[jira] [Updated] (CTAKES-237) Consolidate the rx_norm index lookup into the same umls dictionary

[ https://issues.apache.org/jira/browse/CTAKES-237?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-237: -- Fix Version/s: (was: future enhancement) 4.0.0 > Consolidate the rx_norm index lo

[jira] [Resolved] (CTAKES-237) Consolidate the rx_norm index lookup into the same umls dictionary

[ https://issues.apache.org/jira/browse/CTAKES-237?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-237. --- Resolution: Resolved While the old dictionary lookup does still perform multiple lookups, it is no lo

[jira] [Assigned] (CTAKES-237) Consolidate the rx_norm index lookup into the same umls dictionary

[ https://issues.apache.org/jira/browse/CTAKES-237?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-237: - Assignee: Sean Finan > Consolidate the rx_norm index lookup into the same umls dictionary > -

[jira] [Updated] (CTAKES-403) Build your own Dictionary not working

[ https://issues.apache.org/jira/browse/CTAKES-403?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-403: -- Fix Version/s: 4.0.0 > Build your own Dictionary not working > - > >

[jira] [Resolved] (CTAKES-403) Build your own Dictionary not working

[ https://issues.apache.org/jira/browse/CTAKES-403?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-403. --- Resolution: Implemented Assignee: Sean Finan The new dictionary creator gui assists in building

[jira] [Updated] (CTAKES-188) GSoC: Create an interface for cTAKES

[ https://issues.apache.org/jira/browse/CTAKES-188?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-188: -- Fix Version/s: (was: future enhancement) 4.0.0 > GSoC: Create an interface for cT

[jira] [Updated] (CTAKES-188) GSoC: Create an interface for cTAKES

[ https://issues.apache.org/jira/browse/CTAKES-188?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-188: -- Labels: (was: gsoc gsoc2013) > GSoC: Create an interface for cTAKES >

[jira] [Assigned] (CTAKES-188) GSoC: Create an interface for cTAKES

[ https://issues.apache.org/jira/browse/CTAKES-188?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-188: - Assignee: Sean Finan > GSoC: Create an interface for cTAKES > ---

[jira] [Commented] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters

[ https://issues.apache.org/jira/browse/CTAKES-155?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959321#comment-15959321 ] Sean Finan commented on CTAKES-155: --- Consider using the RegexSegmenter instead. It read

[jira] [Commented] (CTAKES-328) Clean up XML Annotator Descriptors

[ https://issues.apache.org/jira/browse/CTAKES-328?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959324#comment-15959324 ] Sean Finan commented on CTAKES-328: --- Consider using Piper files instead of xml descripto

[jira] [Updated] (CTAKES-235) Improve Dictionary Lookup Component

[ https://issues.apache.org/jira/browse/CTAKES-235?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-235: -- Fix Version/s: (was: future enhancement) 4.0.0 > Improve Dictionary Lookup Compon

[jira] [Resolved] (CTAKES-235) Improve Dictionary Lookup Component

[ https://issues.apache.org/jira/browse/CTAKES-235?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-235. --- Resolution: Resolved It looks like 3 of 3 dependencies are satisfied. Other than that, I'm not sure

[jira] [Updated] (CTAKES-348) Upgrade to Java 8

[ https://issues.apache.org/jira/browse/CTAKES-348?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-348: -- Fix Version/s: (was: future enhancement) 4.0.0 > Upgrade to Java 8 >

[jira] [Resolved] (CTAKES-348) Upgrade to Java 8

[ https://issues.apache.org/jira/browse/CTAKES-348?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-348. --- Resolution: Implemented In a year of testing, no further issues have been discovered. > Upgrade to Ja

[jira] [Resolved] (CTAKES-66) FileLocator.locateOnClasspath should take Class object

[ https://issues.apache.org/jira/browse/CTAKES-66?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-66. -- Resolution: Fixed Assignee: Sean Finan Fix Version/s: 4.0.0 Done while I was making anoth

[jira] [Created] (CTAKES-431) Refactor out dependencies upon original dictionary lookup

Sean Finan created CTAKES-431: - Summary: Refactor out dependencies upon original dictionary lookup Key: CTAKES-431 URL: https://issues.apache.org/jira/browse/CTAKES-431 Project: cTAKES Issue Type

[jira] [Created] (CTAKES-432) Remove errant @param from javadocs

Sean Finan created CTAKES-432: - Summary: Remove errant @param from javadocs Key: CTAKES-432 URL: https://issues.apache.org/jira/browse/CTAKES-432 Project: cTAKES Issue Type: Task Affects Vers

[jira] [Created] (CTAKES-433) Update to jdk 1.8

Sean Finan created CTAKES-433: - Summary: Update to jdk 1.8 Key: CTAKES-433 URL: https://issues.apache.org/jira/browse/CTAKES-433 Project: cTAKES Issue Type: Task Affects Versions: future enha

[jira] [Created] (CTAKES-434) Add /Edit @PipeBitInfo Annotations to cr, ae and cc classes

Sean Finan created CTAKES-434: - Summary: Add /Edit @PipeBitInfo Annotations to cr, ae and cc classes Key: CTAKES-434 URL: https://issues.apache.org/jira/browse/CTAKES-434 Project: cTAKES Issue T

[jira] [Created] (CTAKES-437) lvg-dist version error when starting CVD or CPE profile

Sean Finan created CTAKES-437: - Summary: lvg-dist version error when starting CVD or CPE profile Key: CTAKES-437 URL: https://issues.apache.org/jira/browse/CTAKES-437 Project: cTAKES Issue Type:

[jira] [Resolved] (CTAKES-437) lvg-dist version error when starting CVD or CPE profile

[ https://issues.apache.org/jira/browse/CTAKES-437?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-437. --- Resolution: Pending Closed Fix Version/s: 4.0.1 Requires additional testing. Testing will be p

[jira] [Created] (CTAKES-438) Clean up pom dependencies

Sean Finan created CTAKES-438: - Summary: Clean up pom dependencies Key: CTAKES-438 URL: https://issues.apache.org/jira/browse/CTAKES-438 Project: cTAKES Issue Type: Improvement Componen

[jira] [Created] (CTAKES-439) ctakes clinical pipeline pom non-dependencies removal

Sean Finan created CTAKES-439: - Summary: ctakes clinical pipeline pom non-dependencies removal Key: CTAKES-439 URL: https://issues.apache.org/jira/browse/CTAKES-439 Project: cTAKES Issue Type: Im

[jira] [Created] (CTAKES-442) npe in simple piper fabricator gui

Sean Finan created CTAKES-442: - Summary: npe in simple piper fabricator gui Key: CTAKES-442 URL: https://issues.apache.org/jira/browse/CTAKES-442 Project: cTAKES Issue Type: Bug Compone

[jira] [Commented] (CTAKES-441) Labs Annotator

[ https://issues.apache.org/jira/browse/CTAKES-441?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15990880#comment-15990880 ] Sean Finan commented on CTAKES-441: --- Excellent, thanks Kean. I will try to find some ti

[jira] [Created] (CTAKES-443) Stop rebuilding the typesystem for every module

Sean Finan created CTAKES-443: - Summary: Stop rebuilding the typesystem for every module Key: CTAKES-443 URL: https://issues.apache.org/jira/browse/CTAKES-443 Project: cTAKES Issue Type: Improvem

[jira] [Created] (CTAKES-444) Get rid of guava

Sean Finan created CTAKES-444: - Summary: Get rid of guava Key: CTAKES-444 URL: https://issues.apache.org/jira/browse/CTAKES-444 Project: cTAKES Issue Type: Improvement Components: ctake

[jira] [Commented] (CTAKES-441) Labs Annotator

[ https://issues.apache.org/jira/browse/CTAKES-441?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15991600#comment-15991600 ] Sean Finan commented on CTAKES-441: --- Hi Kean, Very nice, very simple and easy to underst

[jira] [Assigned] (CTAKES-441) Labs Annotator

[ https://issues.apache.org/jira/browse/CTAKES-441?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-441: - Assignee: Sean Finan > Labs Annotator > -- > > Key: CTAKES-441 >

[jira] [Created] (CTAKES-448) Clean up pom dependencies

Sean Finan created CTAKES-448: - Summary: Clean up pom dependencies Key: CTAKES-448 URL: https://issues.apache.org/jira/browse/CTAKES-448 Project: cTAKES Issue Type: Improvement Componen

[jira] [Commented] (CTAKES-449) PolarityCleartkAnalysisEngine slow for large documents

[ https://issues.apache.org/jira/browse/CTAKES-449?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16080318#comment-16080318 ] Sean Finan commented on CTAKES-449: --- See the devlist emails. The root of the issue has

[jira] [Created] (CTAKES-451) Redo regression test(s)

Sean Finan created CTAKES-451: - Summary: Redo regression test(s) Key: CTAKES-451 URL: https://issues.apache.org/jira/browse/CTAKES-451 Project: cTAKES Issue Type: Improvement Components

[jira] [Commented] (CTAKES-450) CDASegmentAnnotator misses all headings after empty segment

[ https://issues.apache.org/jira/browse/CTAKES-450?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16080316#comment-16080316 ] Sean Finan commented on CTAKES-450: --- Hi Kean, You can take a look at the Regex sectioniz

[jira] [Commented] (CTAKES-455) Password shown in clear in logs

[ https://issues.apache.org/jira/browse/CTAKES-455?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16181530#comment-16181530 ] Sean Finan commented on CTAKES-455: --- Hi Alex, The attached diff does not apply to the lo

[jira] [Updated] (CTAKES-455) Password shown in clear in logs

[ https://issues.apache.org/jira/browse/CTAKES-455?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-455: -- Priority: Minor (was: Major) > Password shown in clear in logs > --- > >

[jira] [Commented] (CTAKES-455) Password shown in clear in logs

[ https://issues.apache.org/jira/browse/CTAKES-455?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16181551#comment-16181551 ] Sean Finan commented on CTAKES-455: --- The display of invalid passwords was added 3 years

[jira] [Assigned] (CTAKES-455) Password shown in clear in logs

[ https://issues.apache.org/jira/browse/CTAKES-455?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan reassigned CTAKES-455: - Assignee: Sean Finan > Password shown in clear in logs > --- > >

[jira] [Resolved] (CTAKES-455) Password shown in clear in logs

[ https://issues.apache.org/jira/browse/CTAKES-455?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-455. --- Resolution: Fixed Fix Version/s: 4.0.1 failed passwords and usernames not logged. Error messag

[jira] [Commented] (CTAKES-450) CDASegmentAnnotator misses all headings after empty segment

[ https://issues.apache.org/jira/browse/CTAKES-450?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16184195#comment-16184195 ] Sean Finan commented on CTAKES-450: --- Hi Kean, Have you had a chance to test the patch?

[jira] [Commented] (CTAKES-442) npe in simple piper fabricator gui

[ https://issues.apache.org/jira/browse/CTAKES-442?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16200689#comment-16200689 ] Sean Finan commented on CTAKES-442: --- What is going on here? This was fixed on May 1st,

[jira] [Resolved] (CTAKES-442) npe in simple piper fabricator gui

[ https://issues.apache.org/jira/browse/CTAKES-442?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-442. --- Resolution: Fixed This is resolved, waiting to be verified and closed. > npe in simple piper fabricat

[jira] [Commented] (CTAKES-442) npe in simple piper fabricator gui

[ https://issues.apache.org/jira/browse/CTAKES-442?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16200806#comment-16200806 ] Sean Finan commented on CTAKES-442: --- No problem, I was just a little confused. > npe in

[jira] [Created] (CTAKES-470) Throw exception when piper file can't be loaded

Sean Finan created CTAKES-470: - Summary: Throw exception when piper file can't be loaded Key: CTAKES-470 URL: https://issues.apache.org/jira/browse/CTAKES-470 Project: cTAKES Issue Type: Improvem

[jira] [Commented] (CTAKES-470) Throw exception when piper file can't be loaded

[ https://issues.apache.org/jira/browse/CTAKES-470?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16218765#comment-16218765 ] Sean Finan commented on CTAKES-470: --- Originally reporting via email: I am assemblying m

[jira] [Closed] (CTAKES-470) Throw exception when piper file can't be loaded

[ https://issues.apache.org/jira/browse/CTAKES-470?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-470. - > Throw exception when piper file can't be loaded > --- > >

[jira] [Resolved] (CTAKES-470) Throw exception when piper file can't be loaded

[ https://issues.apache.org/jira/browse/CTAKES-470?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan resolved CTAKES-470. --- Resolution: Resolved > Throw exception when piper file can't be loaded > -

[jira] [Closed] (CTAKES-441) Labs Annotator

[ https://issues.apache.org/jira/browse/CTAKES-441?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-441. - Resolution: Delivered Fix Version/s: 4.0.1 LabValueFinder checked into ctakes-core. > Labs Annota

[jira] [Created] (CTAKES-485) Add Thread safe default clinical pipeline

Sean Finan created CTAKES-485: - Summary: Add Thread safe default clinical pipeline Key: CTAKES-485 URL: https://issues.apache.org/jira/browse/CTAKES-485 Project: cTAKES Issue Type: New Feature

[jira] [Closed] (CTAKES-485) Add Thread safe default clinical pipeline

[ https://issues.apache.org/jira/browse/CTAKES-485?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-485. - Resolution: Implemented This implementation is thread safe, but not highly concurrent. What does that me

[jira] [Commented] (CTAKES-485) Add Thread safe default clinical pipeline

[ https://issues.apache.org/jira/browse/CTAKES-485?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16266139#comment-16266139 ] Sean Finan commented on CTAKES-485: --- The thread safe pipelines can easily be used with p

[jira] [Created] (CTAKES-486) Improve Logging

Sean Finan created CTAKES-486: - Summary: Improve Logging Key: CTAKES-486 URL: https://issues.apache.org/jira/browse/CTAKES-486 Project: cTAKES Issue Type: Improvement Affects Versions: 4.0.1

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