[jira] [Closed] (CTAKES-363) The smoking pipeline gives a URI is not hierarchical error

[ https://issues.apache.org/jira/browse/CTAKES-363?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-363. -- Resolution: Workaround In looking to see what changed between 3.1.1 and 3.2.2 since it w

[jira] [Resolved] (CTAKES-299) cannot configure ClearNLPSemanticRoleLabelerAE using XML descriptor

[ https://issues.apache.org/jira/browse/CTAKES-299?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-299. Resolution: Fixed Assignee: James Joseph Masanz Fix Version/s: 4.0.0

[jira] [Resolved] (CTAKES-412) Unable to Load AggregatePlaintextUMLSProcessor.XML

[ https://issues.apache.org/jira/browse/CTAKES-412?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-412. Resolution: Information Provided > Unable to Load AggregatePlaintextUMLSProcessor.XM

[jira] [Closed] (CTAKES-412) Unable to Load AggregatePlaintextUMLSProcessor.XML

[ https://issues.apache.org/jira/browse/CTAKES-412?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-412. -- > Unable to Load AggregatePlaintextUMLSProcessor.XML > -

[jira] [Created] (CTAKES-421) Incorporate dictionary builder GUI into cTAKES

James Joseph Masanz created CTAKES-421: -- Summary: Incorporate dictionary builder GUI into cTAKES Key: CTAKES-421 URL: https://issues.apache.org/jira/browse/CTAKES-421 Project: cTAKES Iss

[jira] [Updated] (CTAKES-419) ctakes-trunk-compiletest fails Caused by: org.apache.uima.cas.CASRuntimeException: No sofaFS with name UriView found.

[ https://issues.apache.org/jira/browse/CTAKES-419?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-419: --- Fix Version/s: (was: 3.2.3) 4.0.0 > ctakes-trunk-compiletest fa

[jira] [Updated] (CTAKES-419) ctakes-trunk-compiletest fails Caused by: org.apache.uima.cas.CASRuntimeException: No sofaFS with name UriView found.

[ https://issues.apache.org/jira/browse/CTAKES-419?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-419: --- Affects Version/s: (was: 3.2.3) 4.0.0 > ctakes-trunk-compil

[jira] [Updated] (CTAKES-418) Exception: java.io.FileNotFoundException: ctakes-temporal/data/misc/{various}

[ https://issues.apache.org/jira/browse/CTAKES-418?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-418: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Exception: java.io.FileNotF

[jira] [Updated] (CTAKES-418) Exception: java.io.FileNotFoundException: ctakes-temporal/data/misc/{various}

[ https://issues.apache.org/jira/browse/CTAKES-418?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-418: --- Affects Version/s: (was: 3.2.3) 4.0.0 > Exception: java.io.

[jira] [Updated] (CTAKES-389) cTAKES dictionary lookup missed word starting string bug

[ https://issues.apache.org/jira/browse/CTAKES-389?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-389: --- Affects Version/s: (was: 3.2.3) 4.0.0 > cTAKES dictionary l

[jira] [Updated] (CTAKES-389) cTAKES dictionary lookup missed word starting string bug

[ https://issues.apache.org/jira/browse/CTAKES-389?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-389: --- Fix Version/s: (was: 3.2.3) 4.0.0 > cTAKES dictionary lookup mi

[jira] [Reopened] (CTAKES-389) cTAKES dictionary lookup missed word starting string bug

[ https://issues.apache.org/jira/browse/CTAKES-389?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reopened CTAKES-389: reopen to update affected and fixed versions > cTAKES dictionary lookup missed word sta

[jira] [Resolved] (CTAKES-389) cTAKES dictionary lookup missed word starting string bug

[ https://issues.apache.org/jira/browse/CTAKES-389?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-389. Resolution: Fixed > cTAKES dictionary lookup missed word starting string bug > -

[jira] [Created] (CTAKES-423) Remove redundant entries from pom.xml

James Joseph Masanz created CTAKES-423: -- Summary: Remove redundant entries from pom.xml Key: CTAKES-423 URL: https://issues.apache.org/jira/browse/CTAKES-423 Project: cTAKES Issue Type:

[jira] [Resolved] (CTAKES-355) Upgrade to UIMA 2.7.x

[ https://issues.apache.org/jira/browse/CTAKES-355?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-355. Resolution: Fixed Updated UIMA to 2.9 (including update of Uimafit to latest which i

[jira] [Assigned] (CTAKES-355) Upgrade to UIMA 2.9

[ https://issues.apache.org/jira/browse/CTAKES-355?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reassigned CTAKES-355: -- Assignee: James Joseph Masanz > Upgrade to UIMA 2.9 > --- > >

[jira] [Updated] (CTAKES-355) Upgrade to UIMA 2.9

[ https://issues.apache.org/jira/browse/CTAKES-355?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-355: --- Summary: Upgrade to UIMA 2.9 (was: Upgrade to UIMA 2.7.x) > Upgrade to UIMA 2.9 > ---

[jira] [Reopened] (CTAKES-191) Update Apache OpenNLP dependency to 1.5.3

[ https://issues.apache.org/jira/browse/CTAKES-191?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reopened CTAKES-191: Assignee: James Joseph Masanz > Update Apache OpenNLP dependency to 1.5.3 > --

[jira] [Closed] (CTAKES-191) Update Apache OpenNLP dependency to 1.5.3

[ https://issues.apache.org/jira/browse/CTAKES-191?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-191. -- Resolution: Won't Fix I checked in r1788492 referencing this JIRA by mistake. this one w

[jira] [Assigned] (CTAKES-417) Update OpenNLP to 1.7.2

[ https://issues.apache.org/jira/browse/CTAKES-417?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reassigned CTAKES-417: -- Assignee: James Joseph Masanz (was: Joern Kottmann) > Update OpenNLP to 1.7.2

[jira] [Updated] (CTAKES-417) Update OpenNLP to 1.7.2

[ https://issues.apache.org/jira/browse/CTAKES-417?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-417: --- Summary: Update OpenNLP to 1.7.2 (was: Update OpenNLP to 1.7.1 ) > Update OpenNLP to

[jira] [Commented] (CTAKES-417) Update OpenNLP to 1.7.1

[ https://issues.apache.org/jira/browse/CTAKES-417?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15941062#comment-15941062 ] James Joseph Masanz commented on CTAKES-417: Commit 1788492 [ https://svn.apac

[jira] [Closed] (CTAKES-282) Dirty on check-out in Eclipse

[ https://issues.apache.org/jira/browse/CTAKES-282?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-282. -- > Dirty on check-out in Eclipse > - > > Key: CTA

[jira] [Resolved] (CTAKES-282) Dirty on check-out in Eclipse

[ https://issues.apache.org/jira/browse/CTAKES-282?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-282. Resolution: Fixed Fix Version/s: 4.0.0 I do not see any .project, .classpath,

[jira] [Updated] (CTAKES-411) Fix Unit tests with LVG (URI is not hierarchal in mvn package) test

[ https://issues.apache.org/jira/browse/CTAKES-411?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-411: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Fix Unit tests with LVG (UR

[jira] [Updated] (CTAKES-401) License headers are JavaDoc comments but should be block comments

[ https://issues.apache.org/jira/browse/CTAKES-401?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-401: --- Fix Version/s: (was: 3.2.3) 4.0.0 > License headers are JavaDoc

[jira] [Updated] (CTAKES-399) Add profile to pom.xml which permits build with JDK1.8

[ https://issues.apache.org/jira/browse/CTAKES-399?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-399: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Add profile to pom.xml whic

[jira] [Updated] (CTAKES-387) Upgrade gov.nih.nlm.nls lvg artifact across the codebase

[ https://issues.apache.org/jira/browse/CTAKES-387?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-387: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Upgrade gov.nih.nlm.nls lvg

[jira] [Updated] (CTAKES-386) Remove all .classpath and.project files

[ https://issues.apache.org/jira/browse/CTAKES-386?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-386: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Remove all .classpath and.p

[jira] [Updated] (CTAKES-385) URI is not hierarchical when attempting to obtain lvg.properties within JAR

[ https://issues.apache.org/jira/browse/CTAKES-385?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-385: --- Fix Version/s: (was: 3.2.3) 4.0.0 > URI is not hierarchical whe

[jira] [Updated] (CTAKES-385) URI is not hierarchical when attempting to obtain lvg.properties within JAR

[ https://issues.apache.org/jira/browse/CTAKES-385?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-385: --- Fix Version/s: (was: 4.0.0) > URI is not hierarchical when attempting to obtain lv

[jira] [Updated] (CTAKES-364) Dictionary-Lookup-Fast will fail with URI is not Hierarchical

[ https://issues.apache.org/jira/browse/CTAKES-364?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-364: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Dictionary-Lookup-Fast will

[jira] [Updated] (CTAKES-341) FractionFSM annotates incorrect span

[ https://issues.apache.org/jira/browse/CTAKES-341?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-341: --- Fix Version/s: (was: 3.2.3) 4.0.0 > FractionFSM annotates incor

[jira] [Updated] (CTAKES-371) update PTB tokenization logic in fast dictionary module

[ https://issues.apache.org/jira/browse/CTAKES-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-371: --- Fix Version/s: (was: 3.2.3) 4.0.0 > update PTB tokenization log

[jira] [Resolved] (CTAKES-423) Remove redundant entries from pom.xml

[ https://issues.apache.org/jira/browse/CTAKES-423?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-423. Resolution: Fixed > Remove redundant entries from pom.xml >

[jira] [Assigned] (CTAKES-39) Upgrade LVG to a later version

[ https://issues.apache.org/jira/browse/CTAKES-39?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reassigned CTAKES-39: - Assignee: James Joseph Masanz > Upgrade LVG to a later version > -

[jira] [Closed] (CTAKES-122) include LVG with a future version of cTAKES?

[ https://issues.apache.org/jira/browse/CTAKES-122?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-122. -- Resolution: Won't Fix Fix Version/s: (was: 3.2.3) At nearly a GB, not going t

[jira] [Resolved] (CTAKES-178) parsing of medication strength does not verify a number was discovered (strength value includes both the dosage and strength value in some cases)

[ https://issues.apache.org/jira/browse/CTAKES-178?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-178. Resolution: Fixed Fix Version/s: (was: 3.2.3) 4.0.0 >

[jira] [Updated] (CTAKES-417) Update OpenNLP to 1.7.2

[ https://issues.apache.org/jira/browse/CTAKES-417?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-417: --- Fix Version/s: 4.0.0 > Update OpenNLP to 1.7.2 > > >

[jira] [Resolved] (CTAKES-417) Update OpenNLP to 1.7.2

[ https://issues.apache.org/jira/browse/CTAKES-417?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-417. Resolution: Fixed > Update OpenNLP to 1.7.2 > > >

[jira] [Updated] (CTAKES-39) Upgrade LVG to a later version

[ https://issues.apache.org/jira/browse/CTAKES-39?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-39: -- Fix Version/s: 4.0.0 > Upgrade LVG to a later version > -- >

[jira] [Resolved] (CTAKES-39) Upgrade LVG to a later version

[ https://issues.apache.org/jira/browse/CTAKES-39?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-39. --- Resolution: Fixed > Upgrade LVG to a later version > -- > >

[jira] [Closed] (CTAKES-421) Incorporate dictionary builder GUI into cTAKES

[ https://issues.apache.org/jira/browse/CTAKES-421?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-421. -- Resolution: Duplicate Sean is doing this as part of the more generic GUI Jira item CTAKE

[jira] [Closed] (CTAKES-59) Add cTAKES GUI (web interface)

[ https://issues.apache.org/jira/browse/CTAKES-59?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-59. - Resolution: Duplicate Closing this and CTAKES-421 as Sean is doing both a GUI for running a

[jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline

[ https://issues.apache.org/jira/browse/CTAKES-165?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15947600#comment-15947600 ] James Joseph Masanz commented on CTAKES-165: I think this is low, low priority

[jira] [Updated] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline

[ https://issues.apache.org/jira/browse/CTAKES-165?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-165: --- Fix Version/s: future enhancement > no maven profiles for running via maven other than

[jira] [Commented] (CTAKES-330) runctakesCVD.sh autoload pipeline

[ https://issues.apache.org/jira/browse/CTAKES-330?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15947960#comment-15947960 ] James Joseph Masanz commented on CTAKES-330: runctakesCVD.sh could already can

[jira] [Updated] (CTAKES-380) Placeholder - New Sentence Detector

[ https://issues.apache.org/jira/browse/CTAKES-380?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-380: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Placeholder - New Sentence

[jira] [Updated] (CTAKES-380) New Sentence Detector

[ https://issues.apache.org/jira/browse/CTAKES-380?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-380: --- Summary: New Sentence Detector (was: Placeholder - New Sentence Detector) Updating ti

[jira] [Resolved] (CTAKES-380) New Sentence Detector

[ https://issues.apache.org/jira/browse/CTAKES-380?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-380. Resolution: Fixed > New Sentence Detector > - > >

[jira] [Created] (CTAKES-427) Improve the newer Sentence Detector (SentenceDetectorAnnotatorBIO)

James Joseph Masanz created CTAKES-427: -- Summary: Improve the newer Sentence Detector (SentenceDetectorAnnotatorBIO) Key: CTAKES-427 URL: https://issues.apache.org/jira/browse/CTAKES-427 Project:

[jira] [Updated] (CTAKES-302) Element type "hibernate-mapping" must be followed by either attribute specifications, ">" or "/>".

[ https://issues.apache.org/jira/browse/CTAKES-302?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-302: --- Fix Version/s: (was: 3.2.3) 4.0.0 > Element type "hibernate-map

[jira] [Closed] (CTAKES-302) Element type "hibernate-mapping" must be followed by either attribute specifications, ">" or "/>".

[ https://issues.apache.org/jira/browse/CTAKES-302?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-302. -- Resolution: Fixed > Element type "hibernate-mapping" must be followed by either attribut

[jira] [Reopened] (CTAKES-302) Element type "hibernate-mapping" must be followed by either attribute specifications, ">" or "/>".

[ https://issues.apache.org/jira/browse/CTAKES-302?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reopened CTAKES-302: Assignee: James Joseph Masanz reopen just to close as fixed in 4.0 > Element type

[jira] [Closed] (CTAKES-82) Add ctakes-temporal module

[ https://issues.apache.org/jira/browse/CTAKES-82?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-82. - > Add ctakes-temporal module > -- > > Key: CTAKES-82 >

[jira] [Created] (CTAKES-428) Improve timeline visualization tool that is in sandbox and release it

James Joseph Masanz created CTAKES-428: -- Summary: Improve timeline visualization tool that is in sandbox and release it Key: CTAKES-428 URL: https://issues.apache.org/jira/browse/CTAKES-428 Proje

[jira] [Closed] (CTAKES-25) retrain rest of models using OpenNLP 1.5

[ https://issues.apache.org/jira/browse/CTAKES-25?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-25. - this issue had not been closed when cTAKES' opennlp models were retrained for cTAKES 3.1. Clos

[jira] [Closed] (CTAKES-264) chunk adjuster iterates inefficiently

[ https://issues.apache.org/jira/browse/CTAKES-264?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-264. -- Thanks for fixing this. closing the JIRA issue. > chunk adjuster iterates inefficiently > -

[jira] [Closed] (CTAKES-220) some named entities not found, e.g."coronary artery disease" (chunker not labeling chunks correctly)

[ https://issues.apache.org/jira/browse/CTAKES-220?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-220. -- Verified that in "The patient has coronary artery disease.", the three-word phrase "coronar

[jira] [Closed] (CTAKES-96) Update Dependency Parser and Semantic Role Labeler - Thanks Jinho Choi and Lee Beecker

[ https://issues.apache.org/jira/browse/CTAKES-96?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-96. - Closing this issue that was resolved a while ago. > Update Dependency Parser and Semantic Role

[jira] [Closed] (CTAKES-46) ctakes running problem (run cvd - ClassNotFoundException)

[ https://issues.apache.org/jira/browse/CTAKES-46?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-46. - Closing this issue that was resolved a while ago. > ctakes running problem (run cvd - ClassNot

[jira] [Resolved] (CTAKES-138) Remove 3rd party jars from our SVN

[ https://issues.apache.org/jira/browse/CTAKES-138?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-138. Resolution: Fixed Fix Version/s: (was: 3.2.3) 4.0.0 >

[jira] [Created] (CTAKES-430) new coreference annotator using mention-synchronous paradigm

James Joseph Masanz created CTAKES-430: -- Summary: new coreference annotator using mention-synchronous paradigm Key: CTAKES-430 URL: https://issues.apache.org/jira/browse/CTAKES-430 Project: cTAK

[jira] [Resolved] (CTAKES-430) new coreference annotator using mention-synchronous paradigm

[ https://issues.apache.org/jira/browse/CTAKES-430?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-430. Resolution: Implemented > new coreference annotator using mention-synchronous paradi

[jira] [Resolved] (CTAKES-429) Upgrade all dictionary databases to hsqldb 2.3

[ https://issues.apache.org/jira/browse/CTAKES-429?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-429. Resolution: Fixed > Upgrade all dictionary databases to hsqldb 2.3 > ---

[jira] [Updated] (CTAKES-76) get third party dependencies into Maven Central

[ https://issues.apache.org/jira/browse/CTAKES-76?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-76: -- Fix Version/s: (was: 3.2.3) future enhancement > get third party d

[jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central

[ https://issues.apache.org/jira/browse/CTAKES-76?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959157#comment-15959157 ] James Joseph Masanz commented on CTAKES-76: --- At least some of these, which were u

[jira] [Updated] (CTAKES-74) Tokenizer PennTreeBank breaks with certain apostrophes in tokens.

[ https://issues.apache.org/jira/browse/CTAKES-74?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-74: -- Fix Version/s: (was: 3.2.3) future enhancement > Tokenizer PennTre

[jira] [Commented] (CTAKES-74) Tokenizer PennTreeBank breaks with certain apostrophes in tokens.

[ https://issues.apache.org/jira/browse/CTAKES-74?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15959163#comment-15959163 ] James Joseph Masanz commented on CTAKES-74: --- moving to future release. need to de

[jira] [Updated] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters

[ https://issues.apache.org/jira/browse/CTAKES-155?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-155: --- Fix Version/s: (was: 3.2.3) future enhancement > SimpleSegmentW

[jira] [Updated] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator

[ https://issues.apache.org/jira/browse/CTAKES-172?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-172: --- Fix Version/s: (was: 3.2.3) future enhancement > relation-extra

[jira] [Resolved] (CTAKES-275) some of the older junit tests don't have the right Project name in the run configurations

[ https://issues.apache.org/jira/browse/CTAKES-275?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-275. Resolution: Fixed Fix Version/s: (was: 3.2.3) 4.0.0 >

[jira] [Resolved] (CTAKES-77) Update POSTagger Unit Tests

[ https://issues.apache.org/jira/browse/CTAKES-77?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-77. --- Resolution: Fixed Fix Version/s: (was: 3.2.3) 4.0.0 fixed

[jira] [Resolved] (CTAKES-78) Update Chunker unit tests

[ https://issues.apache.org/jira/browse/CTAKES-78?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-78. --- Resolution: Fixed Fix Version/s: (was: 3.2.3) 4.0.0 fixed

[jira] [Assigned] (CTAKES-410) Create cTAKES 4.0.0 Release

[ https://issues.apache.org/jira/browse/CTAKES-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reassigned CTAKES-410: -- Assignee: Murali Nagendranath (was: James Joseph Masanz) > Create cTAKES 4.0.0

[jira] [Updated] (CTAKES-420) Wiki wishlist

[ https://issues.apache.org/jira/browse/CTAKES-420?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-420: --- Affects Version/s: 4.0.0 future enhancement

[jira] [Created] (CTAKES-435) AE descriptors for processing CDA input is using deprecated assertion annotators

James Joseph Masanz created CTAKES-435: -- Summary: AE descriptors for processing CDA input is using deprecated assertion annotators Key: CTAKES-435 URL: https://issues.apache.org/jira/browse/CTAKES-435

[jira] [Resolved] (CTAKES-435) AE descriptors for processing CDA input is using deprecated assertion annotators

[ https://issues.apache.org/jira/browse/CTAKES-435?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-435. Resolution: Fixed fix does not require a recompile of any java code. not sure if any

[jira] [Created] (CTAKES-440) Improve Preparing a Release process and documentation

James Joseph Masanz created CTAKES-440: -- Summary: Improve Preparing a Release process and documentation Key: CTAKES-440 URL: https://issues.apache.org/jira/browse/CTAKES-440 Project: cTAKES

[jira] [Created] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

James Joseph Masanz created CTAKES-445: -- Summary: java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load Key: CTAKES-445 URL: https://issues.ap

[jira] [Assigned] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz reassigned CTAKES-445: -- Assignee: James Joseph Masanz > java.lang.IllegalArgumentException: URI is not

[jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16106689#comment-16106689 ] James Joseph Masanz commented on CTAKES-445: I've been out on an unexpected, e

[jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16115581#comment-16115581 ] James Joseph Masanz commented on CTAKES-445: I tested out the workaround I des

[jira] [Commented] (CTAKES-452) ctakes-template-filler (RelationExtractorAggregateWithoutOrangeBook.xml) refers to a non-existing file

[ https://issues.apache.org/jira/browse/CTAKES-452?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16115809#comment-16115809 ] James Joseph Masanz commented on CTAKES-452: This xml file is mentioned on ht

[jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16185238#comment-16185238 ] James Joseph Masanz commented on CTAKES-445: Reminder to myself to look at thi

[jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16187484#comment-16187484 ] James Joseph Masanz commented on CTAKES-445: After applying the patch and buil

[jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16189942#comment-16189942 ] James Joseph Masanz commented on CTAKES-445: Yuriy, the cTAKES User Install Gu

[jira] [Commented] (CTAKES-445) java.lang.IllegalArgumentException: URI is not hierarchical - org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load

[ https://issues.apache.org/jira/browse/CTAKES-445?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16190431#comment-16190431 ] James Joseph Masanz commented on CTAKES-445: I'm transferring the question/dis

[jira] [Resolved] (CTAKES-454) cTAKES demo down

[ https://issues.apache.org/jira/browse/CTAKES-454?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-454. Resolution: Resolved Looks like someone restarted the demos. They run for me using C

[jira] [Updated] (CTAKES-410) Create cTAKES 4.0.0 Release

[ https://issues.apache.org/jira/browse/CTAKES-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz updated CTAKES-410: --- Description: 4.0.0 release related tasks (was: Place holder for 3.2.3 release related

[jira] [Closed] (CTAKES-410) Create cTAKES 4.0.0 Release

[ https://issues.apache.org/jira/browse/CTAKES-410?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-410. -- Resolution: Done Thanks Murali and all. > Create cTAKES 4.0.0 Release > ---

[jira] [Resolved] (CTAKES-398) Cannot access cTAKES forums

[ https://issues.apache.org/jira/browse/CTAKES-398?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-398. Resolution: Resolved Fix Version/s: 4.0.0 For cTAKES 4.0 there is a GUI for c

[jira] [Resolved] (CTAKES-392) org.apache.ctakes.core.util.IdentifiedAnnotationUtil missing

[ https://issues.apache.org/jira/browse/CTAKES-392?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz resolved CTAKES-392. Resolution: Fixed Fix Version/s: 4.0.0 see OntologyConceptUtil > org.apache.

[jira] [Closed] (CTAKES-330) runctakesCVD.sh autoload pipeline

[ https://issues.apache.org/jira/browse/CTAKES-330?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-330. -- Resolution: Fixed Fix Version/s: (was: future enhancement)

[jira] [Closed] (CTAKES-47) codes and OUI in CreateLuceneIndexForSnomedLikeSample.java

[ https://issues.apache.org/jira/browse/CTAKES-47?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-47. - just cleaning up old JIRA issues that hadn't been closed > codes and OUI in CreateLuceneIndexF

[jira] [Closed] (CTAKES-57) Type System updates for 3.x-incubating

[ https://issues.apache.org/jira/browse/CTAKES-57?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-57. - just cleaning up old JIRA issues that hadn't been closed > Type System updates for 3.x-incubat

[jira] [Closed] (CTAKES-32) dictionary lookup creates new LookupTokens many times

[ https://issues.apache.org/jira/browse/CTAKES-32?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-32. - just cleaning up old JIRA issues that hadn't been closed > dictionary lookup creates new Looku

[jira] [Closed] (CTAKES-14) TimeMention is missing feature for what is being manually annotated as "class"

[ https://issues.apache.org/jira/browse/CTAKES-14?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-14. - just cleaning up old JIRA issues that hadn't been closed > TimeMention is missing feature for

[jira] [Closed] (CTAKES-86) ConvertandCompare.java and Compare.java have bug in an error message

[ https://issues.apache.org/jira/browse/CTAKES-86?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-86. - just cleaning up old JIRA issues that hadn't been closed > ConvertandCompare.java and Compare.

[jira] [Closed] (CTAKES-87) Merge in assertion code from SF.net SVN that was not captured in the svndump

[ https://issues.apache.org/jira/browse/CTAKES-87?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] James Joseph Masanz closed CTAKES-87. - just cleaning up old JIRA issues that hadn't been closed > Merge in assertion code from SF.net

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