Hi Ruben.
Related: the CRAN package “nonmemica” has a function as.model() that parses
NONMEM control streams. Type “?nonmemica” at the R prompt after loading. See
also https://github.com/MikeKSmith/rspeaksnonmem . Happy to discuss further.
Kind regards,
Tim
Tim Bergsma, PhD
Associate
ards,
Tim
install.packages('devtools')
library(devtools)
install_github('bergsmat/tad')
library(tad)
?tad
example(tad)
Tim Bergsma, PhD
Associate Director
Certara Strategic Consulting
[cid:image003.png@01D1D6CC.304CFF80]
m. 860.930.9931
tim.berg...@certara.com<mailto:tim.berg..
value
1 500 1 1 8.356574553705150E-003
1.1 500 2 1 1.998541192889696E-003
1.2 500 2 2 3.670802840050978E-002
1.3 500 3 1 9.388447573620267E-003
1.4 500 3 2 2.067599628295605E-002
1.5 500 3 3 3.886729679204634E-002
Tim Bergsma
Metrum Research Group, LLC
Tariffville, CT
Shirley,
The R package "metrumrg" has a function "rlog" that returns a
data.frame containing thetas, omegas, sigmas, mofv, etc for one or
more NONMEM runs. Available on CRAN. Contact me offline for any
additional help.
Kind regards,
Tim Bergsma
Metrum Research Group, LLC
t
Joachim,
Please see the CRAN package "metrumrg". Look for the function
"riwish", written by Leonid Gibiansky. Any errors are mine
(maintainer).
-Tim
Tim Bergsma, PhD
Metrum Research Group LLC
Tariffville, CT
860-930-9931
On Wed, Feb 22, 2012 at 7:53 AM, Joachim Grevel w
. Use with MIfuns version 4.3.7. Please see links
below.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
homepage: http://nmqual.googlecode.com
details: http://code.google.com/p/nmqual/downloads/detail?name=nmqual-8.1.5.zip
download: http://nmqual.googlecode.com/files/nmqual
has been tested on Linux and Mac OS X.
Modifications for Windows should be fairly intuitive. NMQual 8.0.2 is
not back-compatible with earlier NONMEM versions. MIfuns versions
4.3.2 and later support NMQual 8.0.2/NONMEM 7.2.0 with
back-compatibility.
Please see help link below.
Regards,
Tim Bergsma
; subdirectory). The configuration file must
contain the following line.
changes.bugs.nm6.xml
NMQual is a system for creating NONMEM installations; it features
scripted bug fixes and self-documenting output.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
homepage: http://nmqual.goo
lations; it features
scripted bug fixes and self-documenting output.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
homepage: http://nmqual.googlecode.com
download: http://nmqual.googlecode.com/files/nmqual-7.0.1.zip
changes: http://code.google.com/p/nmqual/wiki/UpdateHistory
questions. Note the link to our new 10 minute
training video. You may also email me directly: t...@metrumrg.com.
Kind regards,
Tim Bergsma
Metrum Institute
ions. Ample time is reserved for implementation-specific
questions. Next opportunity is March 11, 1-3pm Eastern. MI110 is
offered again on Jun 25. For details and sign-up, visit
http://metruminstitute.org/training/index.html.
Kind regards,
Tim Bergsma
Senior Scientist
Metrum Institute
mqual/wiki/UserGuide#Running_NONMEM, point
3). It also has expanded advice for configuration with the Intel
Fortran compiler.
NMQual is a system for creating NONMEM installations; it features
scripted bug fixes and self-documenting output.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group,
ing/.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
[EMAIL PROTECTED]
.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
homepage: http://metruminstitute.org/downloads/nmqual/
changes: http://metruminstitute.org/downloads/nmqual/#updates
download: http://nmqual.googlecode.com/files/nmqual-6.3.2.zip
source: http://code.google.com/p/nmqual/
d registration, please visit
http://metruminstitute.org/training/.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
[EMAIL PROTECTED]
ing/.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
[EMAIL PROTECTED]
NMQual may need
slight alterations. See 'changes' link below for details.
NMQual is a system for creating NONMEM installations; it features
scripted bug fixes and self-documenting output.
Regards,
Tim Bergsma, PhD
Senior Scientist
Metrum Research Group, LLC
homepage: http://metrumins
self-documenting output. NMQual development
is now hosted as a Google Code project; revision history available.
Regards,
Tim Bergsma, PhD
Metrum Research Group, LLC
homepage: http://metruminstitute.org/downloads/nmqual/
download: http://metruminstitute.org/downloads/nmqual/nmqual-6.2.2.zip
Metrum Institute and Random Technologies LLC are pleased to announce the
availability of the SASxport package for the R programming language.
Development of SASxport was motivated by a desire to interconvert R and
SAS TRANSPORT (‘xport’) formats for NMTRAN data sets. In particular, the
ability
Metrum Institute is pleased to announce the release of NMQual version
6.2.1. This version adds fixes for NONMEM VI that correspond to Bug
Alert #5 (8-30-2007). NMQual is a system for creating NONMEM
installations, featuring scripted bug fixes and self-documenting output.
Regards,
Tim
x27;fix'. My apologies.
"Selective inactivation" is much better; thanks for pointing it out.
Regards,
Tim.
Thanks
Tom
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Tim Bergsma
Sent: Thursday, June 14, 2007 1:01 PM
To: nmusers@globomaxnm.co
. Other
changes are summarized at the 'changes' link below. NMQual is a system
for creating NONMEM installations, featuring scripted bug fixes and
self-documenting output.
Regards,
Tim Bergsma, PhD
Metrum Research Group, LLC
homepage: http://metruminstitute.org/downloads/nmqual/
downlo
same
title, he championed the idea that "we know more than we can tell".
Tim Bergsma, Ph.D.
Bonate, Peter wrote:
Sometimes these threads kill me. There is a degree of art to modeling.
The art is the intangible things that we do during model development.
If there was no art, if
gt; Login As (from the window menu) and you will get a login
and password screen.
Bill
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On
Behalf Of Tim Bergsma
Sent: Thursday, March 01, 2007 10:40 AM
To: nmusers@globomaxnm.com
Subject: [NMusers] Accessing NONMEM VI U
ECTED]/NONMEM_VI_fixed_routines/NONMEM_27FEB2007/BLKDAT.for
Regards,
Tim Bergsma
Metrum Research Group, LLC
get nmvi level 1.1 upgrade?
Sam
Dear NMUSERS,
NMQual version 6.1.1 is available at
http://metruminstitute.org/downloads/nmqual/. It implements fixes for
NONMEM bugs 4 and 5, as described in NONMEM Bug Alert #4.
Regards,
Tim Bergsma
Metrum Research Group, LLC
Dear NMUSERS,
NMQual version 6.1.1 is available at
http://metruminstitute.org/downloads/nmqual/. It implements fixes for
NONMEM bugs 4 and 5, as described in NONMEM Bug Alert #4.
Regards,
Tim Bergsma
Metrum Research Group, LLC
.4.8. It looks
promising.
Regards,
Tim Bergsma
RIBBA BENJAMIN wrote:
Hello,
I'm trying to install NONMEM V 1.1 on my MacBook (Mac OS X 10.4.8). I
followed instructions I found in a zip file: "Setting up NONMEM under
Mac OS X" at the following address: http://www.boomer.org/pkin/
NMQual 6.1.0 is available at
http://metruminstitute.org/downloads/nmqual/. It fixes a bug in NMQual
6.0.0: when installing NONMEM6, NMQual did not install the html (help)
files. Also, NMQual 6.1.0 implements bug fixes for all NONMEM/NMTRAN
bugs reported through today, 2-13-2007 (NONMEM VI 1.0
Metrum Institute is pleased to announce the release of NMQual version
6.0.0, available at http://metruminstitute.org/downloads/nmqual/. NMQual
creates documentation-rich NONMEM®* installations with seamless
integration of bug fixes and user options. Release 6.0.0 adds support
for NONMEM® 6 and
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