Hi there!! i have some files .txt and I want to trasform all using a python
script to another output on new directory:
SCRIPT=~/Desktop/python_script.py
RDIR=.
RFILES:=$(wildcard $(RDIR)/*.txt)
.PHONY: clean all
prepare:
mkdir RESHAPE2 ;\
for d in $(RFILES);\
do \
echo
Dear all,
I still try to learn make file script. I have write this script:
RDIR=.
RFILES:=$(wildcard $(RDIR)/*.list)
SCRIPT=~/Software/QC3.sh
OUTDIR=RESULTS
OUTFILES=RESULTS/fastqReport.html
.PHONY: clean all qc
all: $(OUTDIR) $(OUTFILES) qc
qc: %.list
$(SCRIPT) $<
$(OUTDIR):
Dear All.
I have some xls on a folder RESHAPE/. I want use the file on RESHAPE folder as
input for my script and output on other FOLDEr XLS
This is what I made starting from yur suggestions. RDIR=RESHAPE
RFILES:=$(wildcard $(RDIR)/*.xls)
SCRIPT=~/Desktop/Create_xls.py
OUTDIR=XLS2
NAME=$(notdi
I resolve using this
OUTFILES=$(patsubst $(RDIR)/%.xls,$(OUTDIR)/%.xls,$(RFILES))
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Dear All,
I try to learn makefile language. I want launch a tools using make.
On the RAW folder I have my input file (R1 and R2)
My tool need 2 input files and I prepare using patsubst. Here an example of
input file
RAW/290_CGATGT_L001_R1_001.fastq.gz RAW/300_CCGTCC_L001_R2_001.fastq.gz
I
Dear All
Sorry for my aive question iI'm learning ...
I have write a makefile that prepare some files:
RDIR=.
RFILES:=$(wildcard $(RDIR)/*.vcf)
OUTDIR=ORIGINAL
OUTFILES=$(patsubst %.vcf,$(OUTDIR)/%.gz,$(RFILES))
BCFTOOLS=bcftools
OUTSOMATIC=SOMATIC
OUTVARDICT=$(patsubst
$(OUTDIR)/%vardict.gz,$
