Hi,
I'd like to try the guix package manager but am stuck installing it on
Fedora 38 with selinux. I should say I don't know anything about the
details of either guix or selinux.
I know a few other persons that also wanted to try guix but gave up due
to issues with selinux, so I think solving
llation, but I was
able to get guix running on Fedora using rpm packages from copr:
https://copr.fedorainfracloud.org/coprs/lantw44/guix/
If you can't find solution to the SELinux problem, maybe
give those rpm packages a try.
Best regards,
Markku
On Tue, Oct 17, 2023 at 09:42:58AM -0700, Alexi
g.
Alexis
On 18/10/2023 10:06, Alexis Simon wrote:
Hi, Thanks for the suggestion.
I stumbled on this guix rpm but it seems also that selinux needs to be
disabled with that one.
I think the maintainer initially wanted to apply selinux policies but in
the end commented out all those parts. (Ther
Hi,
So trying to prepare a patch, I realized those changes are already in
master. So that's the reason I didn't get them in the normal stable
release install.
Alexis
On 18/10/2023 19:02, Maxim Cournoyer wrote:
Hello,
Alexis Simon writes:
Ok I think I'm starting to get s
Hi,
Is there any fish power-user using guix here who could help me figuring
out how to set up everything correctly?
My system:
- guix installed on Fedora
- fish installed through Fedora
- My path when I open a new shell, set up with the fish_add_path -U:
/home/alexis/.config/guix/current/bin /
-P -p ~/.nix-profile/bin
╎ fish_add_path -P -p ~/.guix-profile/bin
╎ fish_add_path -P -p ~/.config/guix/current/bin
end
--8<---cut here---end--->8---
Now the guix shell path is correctly prepended to my path!
Best,
Alexis
On 23/10/2023 02:47, Unstable
Hi,
I've been trying to package a science python software that mixes some
C++ and rust dependencies.
https://github.com/molpopgen/fwdpy11
I'm stuck in how to handle this.
Going the pyproject-build-system way, the cargo part errors at accessing
crates.io as would be expected, I guess I should
n this one repository
has both, I wonder if it would make sense to build them separately (as
two packages), and have one as an input of the other.
Presumably this would mean the python package taking the rust package as
an input, but the details might be more involved.
On Sun, Feb 11 2024, Alexis Simon wro
Fair enough, I just meant that it's pretty hard as a newcomer to know
which build system You're supposed to use to start with when
encountering a project where several languages are used.
Alexis
On 13/02/2024 13:46, Carlo Zancanaro wrote:
On Tue, Feb 13 2024, Alexis Simon wrote:
is not present in the native-inputs, although I specify it in the
package.
Thanks,
Alexis
On 13/02/2024 13:55, Alexis Simon wrote:
Fair enough, I just meant that it's pretty hard as a newcomer to know
which build system You're supposed to use to start with when
encountering a proje
exception _ #:continuable? _)
ice-9/boot-9.scm:1685:16: In procedure raise-exception:
In procedure apply: Apply to non-list: #f
```
Thanks
Alexis
On 15/02/2024 22:08, Alexis Simon wrote:
Hi,
So right now I'm trying to go the splitting in two packages way, similar
to what is done for python-crypto
On 17/02/2024 03:50, Carlo Zancanaro wrote:
Hi Alexis,
On Fri, Feb 16 2024, Alexis Simon wrote:
```
error: in phase 'check-python-module': uncaught exception:
wrong-type-arg "apply" "Apply to non-list: ~S" (#f) (#f)
phase `check-python-module' failed aft
for reference, I finally managed to get this working.
See attached file.
Thanks for the help
Alexis
On 17/02/2024 08:46, Alexis Simon wrote:
On 17/02/2024 03:50, Carlo Zancanaro wrote:
Hi Alexis,
On Fri, Feb 16 2024, Alexis Simon wrote:
```
error: in phase 'check-python-module'
Hi, I've spent nearly the day on this and it's driving me crazy.
I am trying to package this cyvcf2 [1]
I am attaching the packaging I've tried.
The build is failing with this error:
running build_ext
# cyvcf2: htslib mode is BUILTIN
# cyvcf2: htslib configure options is None
error: [Errno 2] No
On 22/03/2024 08:25, Simon Tournier wrote:
Hi,
On jeu., 21 mars 2024 at 18:03, Alexis Simon via Guix-Science
wrote:
The build is failing with this error:
running build_ext
# cyvcf2: htslib mode is BUILTIN
# cyvcf2: htslib configure options is None
error: [Errno 2] No such file or directory
Hi,
this is great, thanks for fixing the tests and improving the packaging.
On 18/04/2024 02:13, Ricardo Wurmus wrote:
Hi,
I've abandoned running the tests though, I'm hitting a module not
found error. pytest doesn't manage to load the just built module,
probably an issue with the paths.
It
Hi Polyedre,
I think having python-setuptools-scm in your native-inputs should be enough for building with the
right version number.
At least it was enough for me when I encountered this issue before.
Best,
Alexis
On 01/06/2024 12:49, Polyedre wrote:
Hello,
While trying to package maestral[
Hi,
One option could be to redirect the output to a file and then copy the
content from there with an editor. `>` if it's stdout and `2>` if it's
stderr.
For example I can copy to clipboard in helix editor, I'm pretty sure
this is possible with other terminal editors as well.
Alexis
On 07
Hi,
Would anyone know reasons for a patch to not be found in a package
definition?
I have this source:
---
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/PalamaraLab/arg-needle-lib.git";)
(commit (string-append
Hello,
I've made a channel with this file structure
guix-tsverse/packages/*
.guix-authorizations
.guix-channel
tsverse-manifest.scm
tsverse-channels.scm
My issue is that I get errors because the two *.scm files at the root of
this (manifest and channels that I would like to have to build a
co
Hi,
Thanks Ludovic for the answer.
I'm still not really sold on either solution, i.e. yours and Romain
Garbage's one where I just remove the .scm extensions from files I don't
want included.
When using my channel externally, would imports still look like
(use-modules (guix-tsverse packages fo
Hi,
I'm trying to work on a python package depending on python-panel but I'm
out of my depth trying to package this one.
python-panel is depending on npm compilation and I don't know how to
proceed from there.
So I have two questions:
- Do anyone know any similar cases that I could take as
.
So you could create npm-panel, and then make python-panel depend on
npm-panel, both using the same source.
All of this is quite hacky and untested, maybe somebody else can provide
actual guidance.
Best of luck,
Edouard.
Alexis Simon writes:
Hi,
I'm trying to work on a python package d
IX_PYTHONPATH"'
```
First one gives
/gnu/store/rxfshmxwk8pas52lpmhhnqys8apwynpr-profile/lib/python3.11/site-packages
Second one gives
/gnu/store/rxfshmxwk8pas52lpmhhnqys8apwynpr-profile/lib/python2.7/site-packages
Alexis
On 03/06/2025 10:01, Alexis Simon wrote:
Hello,
I have an issue w
m mainly
used on HPC clusters. So very much like docker.
Alexis Simon writes:
a little addition to this, to reproduce you can do
```
guix pack -f squashfs bash python | \
xargs -I % sh -c 'apptainer exec % bash -c "echo \$GUIX_PYTHONPATH"'
guix pack -f squashfs bash p
gh to try and fix this myself so I'll
open an issue for it.
Best,
Alexis
On 03/06/2025 22:48, Rutherther wrote:
Alexis Simon writes:
Thanks a lot for the lead, it seems indeed that this bash profile is not
loaded. You're right that the GUIX_PYTHONPATH is properly defined in t
For reference, issue opened here
https://codeberg.org/guix/guix/issues/419
On 04/06/2025 09:53, Alexis Simon wrote:
No need to apologize, this is extremely helpful as you managed to
pinpoint the problem.
Which I guess stems from how this function defines the env
https://codeberg.org/guix/guix
Hello,
I have an issue with how the python path for libraries is defined in a
guix pack.
I build it with a manifest containing modules for both python 3 and
python 2, so both versions are present.
When using the same manifest in guix shell there is no issue and
GUIX_PYTHONPATH contains both
understanding of the dependency graph.
Cheers,
Alexis
On 30/05/2025 16:12, Alexis Simon wrote:
Hi, how do you usually solve conflicting version in guix pack?
--
guix pack: error: profile contains conflicting entries for python-tornado
guix pack: error: first entry: python-tornado
Hi, how do you usually solve conflicting version in guix pack?
--
guix pack: error: profile contains conflicting entries for python-tornado
guix pack: error: first entry: python-tornado@5.1.1
/gnu/store/psv4jhw3274mb3gcc63668jwgavpqcwj-python-tornado-5.1.1
guix pack: error:... pro
Hi,
I wanted to reinstall my guix setup on ubuntu 25.04 to benefit from the
unpriviledged guix-daemon.
But I seem to have simply managed to bork my guix install.
I used the latest binary package with the install.sh script to perform a
fresh install.
When running guix pull, I get the follow
, although not ideal.
On 12/06/2025 15:27, Cayetano Santos wrote:
jeu. 12 juin 2025 at 15:19, Alexis Simon wrote:
Hi,
I wanted to reinstall my guix setup on ubuntu 25.04 to benefit from the
unpriviledged
guix-daemon.
Did you completely removed previous install before ?
I've use
python-typing-extensions))
(native-inputs (list python-pip))
(home-page #f)
(synopsis "The powerful data exploration & web app framework for
Python.")
(description
"The powerful data exploration & web app framework for Python."
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