Re: packaging python-cyvcf2

2024-04-20 Thread Alexis Simon
Hi, this is great, thanks for fixing the tests and improving the packaging. On 18/04/2024 02:13, Ricardo Wurmus wrote: Hi, I've abandoned running the tests though, I'm hitting a module not found error. pytest doesn't manage to load the just built module, probably an issue with the paths. It

Re: packaging python-cyvcf2

2024-03-26 Thread Simon Tournier
Hi Alexis, On ven., 22 mars 2024 at 12:38, Alexis Simon wrote: > I'm attaching the new version for reference. Cool! Well, maybe this package could be part of Guix Science channel or another. WDYT? Cheers, simon

Re: packaging python-cyvcf2

2024-03-22 Thread Alexis Simon
On 22/03/2024 08:25, Simon Tournier wrote: Hi, On jeu., 21 mars 2024 at 18:03, Alexis Simon via Guix-Science wrote: The build is failing with this error: running build_ext # cyvcf2: htslib mode is BUILTIN # cyvcf2: htslib configure options is None error: [Errno 2] No such file or directory:

Re: packaging python-cyvcf2

2024-03-22 Thread Simon Tournier
Hi, On jeu., 21 mars 2024 at 18:03, Alexis Simon via Guix-Science wrote: > The build is failing with this error: > running build_ext > # cyvcf2: htslib mode is BUILTIN > # cyvcf2: htslib configure options is None > error: [Errno 2] No such file or directory: './configure' > error: in phase 'bui

packaging python-cyvcf2

2024-03-21 Thread Alexis Simon
Hi, I've spent nearly the day on this and it's driving me crazy. I am trying to package this cyvcf2 [1] I am attaching the packaging I've tried. The build is failing with this error: running build_ext # cyvcf2: htslib mode is BUILTIN # cyvcf2: htslib configure options is None error: [Errno 2] No