IcedTea is not linking correctly with libjvm.so

2017-10-21 Thread Roel Janssen
a patch for option 2, and see if that works. But maybe option 1 would be better. Thanks for your time. Kind regards, Roel Janssen

Re: IcedTea is not linking correctly with libjvm.so

2017-10-22 Thread Roel Janssen
Chris Marusich writes: > Roel Janssen writes: > >> 1. Fix the recipe to make sure libjvm.so is found, and thus libnet.so is >> linked correctly. >> >> 2. Copy or make a symlink of libjvm.so to the parent directory >>(lib/amd64), where the other libr

Re: IcedTea is not linking correctly with libjvm.so

2017-10-24 Thread Roel Janssen
Chris Marusich writes: > Roel Janssen writes: > >> Chris Marusich writes: >> >>> Roel Janssen writes: >>> >>>> 1. Fix the recipe to make sure libjvm.so is found, and thus libnet.so is >>>> linked correctly. >>>> >>

Re: IcedTea is not linking correctly with libjvm.so

2017-10-24 Thread Roel Janssen
Ludovic Courtès writes: > Hi! > > Roel Janssen skribis: > >> Looking into this shared object, I found that it cannot find libjvm.so: >> $ ldd >> /gnu/store/q9ad5zvxpm2spiddcj01sw3jkm5vpgva-icedtea-3.5.1/lib/amd64/libnet.so >> linux-vdso.so.1 => (

Re: IcedTea is not linking correctly with libjvm.so

2017-10-30 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> gnu/packages/java.scm | 12 >> 1 file changed, 12 insertions(+) >> >> diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm >> index 95fba20e8..81cfdc132 100644 >> --- a/gnu/packag

Re: IcedTea is not linking correctly with libjvm.so

2017-11-01 Thread Roel Janssen
: ~ λ guix build icedtea@2 --no-grafts /gnu/store/cbbn89cggf86fq57h7ya7jb70qckq49j-icedtea-2.6.11-doc /gnu/store/xcaxjgafjip9pkfrnnrj18wfyykyjcrw-icedtea-2.6.11-jdk /gnu/store/vk6llk5zmvwysc9jcixj7hvxprazmri0-icedtea-2.6.11 And to confirm: ~ λ ls -lh /gnu/store/vk6llk5zmvwysc9jcixj7hvxprazmri0-icedtea-2.6.11/lib/amd64/ | grep libjvm lrwxrwxrwx 2 root root 85 1970-01-01 1970 libjvm.so -> /gnu/store/vk6llk5zmvwysc9jcixj7hvxprazmri0-icedtea-2.6.11/lib/amd64/server/libjvm.so Kind regards, Roel Janssen

Creating Docker containers in Scheme

2017-11-02 Thread Roel Janssen
uld add to the the public interface of a module? Kind regards, Roel Janssen

Re: Let’s meet before FOSDEM!

2017-11-07 Thread Roel Janssen
hing out to more > users/contributors, Guix & HPC, improving our infrastructure and > organization, etc.), and possibly hacking sessions. > > Who would be willing to join? (You can reply privately if you prefer.) Count me in! Kind regards, Roel Janssen

Re: Creating Docker containers in Scheme

2017-11-08 Thread Roel Janssen
Ludovic Courtès writes: > Hi, > > Roel Janssen skribis: > >> I'd like to create a Docker container from Scheme. Looking at >> guix/scripts/pack.scm, I believe something like this should be possible: >> >> (docker-image "my-container" >

Re: Performance regression on NFS with new manifest version

2017-11-08 Thread Roel Janssen
Ludovic Courtès writes: > Hello, > > Roel Janssen skribis: > >> I couldn't install *all* R packages, but I used it on our shared R >> profile: >> >> $ guixr package --list-installed -p /gnu/profiles/per-language/r >> ncurses 6.0 out

Re: 01/01: gnu: vlc: Enable libdvdread and libdvdcss support.

2018-01-04 Thread Roel Janssen
uot; ,libdvdcss))) > (description > "Libdvdread provides a simple foundation for reading DVD video > > ... because dvdread.pc Requires.private libdvdcss. > > Not sure what's up with meson's unhelpful error message... I can confirm that this fixes the build of gnome-disk-utility. Should we fix dvdread.pc, or propagate it with libdvdread? Kind regards, Roel Janssen

Re: 01/01: gnu: vlc: Enable libdvdread and libdvdcss support.

2018-01-04 Thread Roel Janssen
Danny Milosavljevic writes: > Hi Roel, > > On Thu, 04 Jan 2018 14:59:53 +0100 > Roel Janssen wrote: > >> I can confirm that this fixes the build of gnome-disk-utility. >> >> Should we fix dvdread.pc, or propagate it with libdvdread? > > I think we should

Re: 01/01: gnu: vlc: Enable libdvdread and libdvdcss support.

2018-01-04 Thread Roel Janssen
Mark H Weaver writes: > Roel Janssen writes: > >> Danny Milosavljevic writes: >> >>> Hi Roel, >>> >>> On Thu, 04 Jan 2018 14:59:53 +0100 >>> Roel Janssen wrote: >>> >>>> I can confirm that this fixes the build of gn

Re: Guix Workflow Language ?

2018-01-24 Thread Roel Janssen
). > > > What do you think about feeding GWL engine by CWL pipeline ? I am not sure what you mean by this. Do you mean, run a CWL workflow using the GWL? Then my question would be: Where does the software come from? Guix, or some other package manager? What would the added benefit of GWL be? > Thank you for any advice. > > All the best, > simon Thanks for your interest! Kind regards, Roel Janssen

Re: Guix Workflow Language ?

2018-01-25 Thread Roel Janssen
L > representation of the workflow > - write a exporter to CWL + Docker image > > What do you think ? Maybe. But in CWL we cannot describe precise software packages. So translating these things to Guix is hard. > > > About the parser, I haven't found yet an easy-to-use Guile lib for > parsing YAML-like files. Any pointer ? Adapt some Racket ones ? I don't know of one, sorry. > Thank you for your insights. > > All the best, > simon Thanks! Kind regards, Roel Janssen

Re: Dinner in Brussels?

2018-01-30 Thread Roel Janssen
; Brusselers ;-))? > > Actually I’m arriving on Thursday afternoon, so if people are around, > I’d be happy to have dinner on Thursday evening too! :-) Let’s arrange > something. I will be in Brussels around 10 PM or so. So I won't join on Thursday. > > Ludo’. Thanks! Kind regards, Roel Janssen

Re: Use guix to distribute data & reproducible (data) science

2018-02-17 Thread Roel Janssen
For example, I use the GNU build system for extracting a tarball that contains a couple of files. Whenever a package changes that affects the GNU build system, the data package will be rebuild. So you could use the trivial build system, but then I'd still need tar and gzip to unpack the tarball. Any change to these and the datasets get duplicated. This is not ideal. Kind regards, Roel Janssen

configure: error: A recent Guile-zlib could not be found; please install it.

2021-04-07 Thread Roel Janssen
ecent Guile-zlib could not be found; please install it. How can I get a working development environment to work on Guix? Kind regards, Roel Janssen

Re: configure: error: A recent Guile-zlib could not be found; please install it.

2021-04-07 Thread Roel Janssen
On Wed, 2021-04-07 at 15:37 +0100, Paul Garlick wrote: > Hi Roel, > > > How can I get a working development environment to work on Guix? > > A 'guix pull' within your profile will update the guile-zlib version > that is used by 'guix environment ...'.  Then the configure script > requirement will

Re: “guix gc”, auto gcroots, cluster deployments

2021-05-10 Thread Roel Janssen
$ ls -lh $localstatedir/gcroots/auto ... 8ypp8dmwnydgbsgjcms2wyb32mng0wri -> /gnu/store/ap0vrfxjdj57iqdapg8q83l4f7aylqzm-profile $ rm /home/me/projects/mrg1_chipseq/.guix-profile-1-link $ guix gc --synchronize-profiles-to-gcroots $ ls -lh $localstatedir/gcroots/auto Kind regards, Roel Janssen

Re: “guix gc”, auto gcroots, cluster deployments

2021-05-10 Thread Roel Janssen
the system > where they were created.  For example, on the server “beast” we > may mount the cluster home directory as “/clusterhome/me”, whereas > on cluster nodes it would be mounted as “/home/me”.  When I have > Guix record a gcroot while working on “beast” I would get a link

Re: Guix Package Search API Server

2022-01-05 Thread Roel Janssen
trecht.nl/). Is it supposed to be so ? > > Tissevert > I can comment on that because I worked at UMC Utrecht and set this particular instance up. It only responds to certain IP addresses (those within the IP range of UMC Utrecht). So this is normal. Kind regards, Roel Janssen

Re: License of your contributions to the blog at guix.gnu.org

2022-04-05 Thread Roel Janssen
ront-Cover Texts, and no Back-Cover Texts. > > Do you agree with the proposed licensing terms for your contributions to > the blog? > I agree. Kind regards, Roel Janssen

Re: Towards reproducibly Jupyter notebooks with Guix-Jupyter

2019-10-10 Thread Roel Janssen
s correctly, the Guix Jupyter kernel allows one to use multiple (completely distinct) environments in a single Notebook. So, mix Python, R and Scheme in a single notebook. That's pretty neat! Kind regards, Roel Janssen

List of failing packages

2019-11-04 Thread Roel Janssen
the build fail, and since when does it fail). Does such a list exist, and if so, where can I find it? Kind regards, Roel Janssen

Re: List of failing packages

2019-11-04 Thread Roel Janssen
On Mon, 2019-11-04 at 14:51 +0100, Julien Lepiller wrote: > Le 4 novembre 2019 13:28:57 GMT+01:00, Roel Janssen a > écrit : > > Dear Guix, > > > > I'm trying to contribute to GNU Guix again, and I'd like to see if > > I > > can solve build fail

[PATCH] gnu: graphviz: Enable Guile library.

2016-05-09 Thread Roel Janssen
ot") (render my-graph "svg" "/home/roel/my-graph.svg") The patch is fairly straightforward, since all that is needed is include the dependencies to the inputs: >From 8e93c01a9c0909f49c4b644c965824fd5f74527a Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 9 May 2016 11:26:18

[PATCH] gnu: Add r-zoo.

2016-05-09 Thread Roel Janssen
Dear Guix, There's still a range of R packages I would like to add. Here's another one of them. Thank you for your time. Kind regards, Roel Janssen >From 11a1793ee3f8c9954fae873dc7a6b94412e51b83 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 9 May 2016 13:15:41 +0200 Su

[PATCH] gnu: Add r-survival.

2016-05-09 Thread Roel Janssen
Dear Guix, Here is another R package. Thank you for your time. Kind regards, Roel Janssen >From c7da5f0f490d75fbf9697fc632fb0066dfefa89f Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 9 May 2016 13:28:53 +0200 Subject: [PATCH] gnu: Add r-survival. * gnu/packages/statistics.scm

[PATCH] gnu: Add r-mass.

2016-05-09 Thread Roel Janssen
Dear Guix, Here is another R package. Thank you for your time. Kind regards, Roel Janssen >From 9afdfc2d9f8d2f0268878a9f16394c862f7dfb2b Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 9 May 2016 13:42:31 +0200 Subject: [PATCH] gnu: Add r-mass. * gnu/packages/statistics.scm (r-m

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-09 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> I would like to add graphviz's Guile interface to the package >> definition. This introduces two new (top-level) dependencies to the >> graphviz package: guile and swig. >> >> An example of the Gu

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-10 Thread Roel Janssen
er package with this file alone, and use it as a propagated input for graphviz? Kind regards, Roel Janssen Danny Milosavljevic writes: > Hi, > > On Mon, 09 May 2016 22:54:00 +0200 > Roel Janssen wrote: > >> it is automatically generated using SWIG. I had to experiment a bit

Re: [PATCH] gnu: Add r-mass.

2016-05-10 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> Dear Guix, >> >> Here is another R package. >> Thank you for your time. >> >> Kind regards, >> Roel Janssen >> >>>From 9afdfc2d9f8d2f0268878a9f16394c862f7dfb2b Mon Sep 17 00:00:0

Re: [PATCH] gnu: Add r-survival.

2016-05-10 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> Dear Guix, >> >> Here is another R package. >> Thank you for your time. >> >> Kind regards, >> Roel Janssen >> >> >>>From c7da5f0f490d75fbf9697fc632fb0066dfefa89f Mon Sep 17 0

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-10 Thread Roel Janssen
-4.9.3-lib/lib/ /gnu/store/...-glibc-2.22/lib/ /gnu/store/...-guile-2.0.11/lib/ Kind regards, Roel Janssen Roel Janssen writes: > Hello Danny, > > Thank you for your elaborate response. This makes it quite easy for me > to write the module file. I added "write" and &qu

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-10 Thread Roel Janssen
>From 704d5eba566af8d90ec7f53e7fc11d989f85c5e6 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 10 May 2016 15:54:01 +0200 Subject: [PATCH 1/2] gnu: graphviz: Enable Guile library. * gnu/packages/graphviz.scm (graphviz): Compile with Guile support. --- gnu/packages/graphviz.scm |

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-11 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> From 704d5eba566af8d90ec7f53e7fc11d989f85c5e6 Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 10 May 2016 15:54:01 +0200 >> Subject: [PATCH 1/2] gnu: graphviz: Enable Guile library. >> >

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-11 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> Ludovic Courtès writes: >> >>> Roel Janssen skribis: >>> >>>> From 704d5eba566af8d90ec7f53e7fc11d989f85c5e6 Mon Sep 17 00:00:00 2001 >>>> From: Roel Janssen >>>> Date:

Workflow management with GNU Guix

2016-05-12 Thread Roel Janssen
Dear Guix, With GNU Guix we are able to install programs to our machines with an amazing level of control over the dependency graph of the programs. We can now know what code will run when we invoke a program. We can now know what the impact of an upgrade will be. And we can now safely roll-bac

Re: Cross-Origin Request blocked when browing non-www of packages page and mixed content

2016-05-16 Thread Roel Janssen
Roel Janssen writes: > Ludovic Courtès writes: > >> Hello! >> >> Roel Janssen skribis: >> >>> I noticed that the build status icons don't work when browing: >>> https://gnu.org/software/guix/packages/ (Notice the lack of 'www.') &

Re: [PATCH] gnu: graphviz: Enable Guile library.

2016-05-17 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> Ludovic Courtès writes: >> >>> Roel Janssen skribis: >>> >>>> Ludovic Courtès writes: >>>> >>>>> Roel Janssen skribis: >>>>> >>>&

[PATCH] gnu: Add dia.

2016-05-19 Thread Roel Janssen
3222b8371e7b6d269a Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Thu, 19 May 2016 10:26:45 +0200 Subject: [PATCH] gnu: Add dia. * gnu/packages/gnome.scm (dia): New variable. --- gnu/packages/gnome.scm | 51 ++ 1 file changed, 51 insertions(+)

[PATCH] gnu: Add poppler-qt5.

2016-05-22 Thread Roel Janssen
Dear Guix, I need poppler-qt5 for Texmaker (see other patch), so here is a patch: >From ef330ec9125246f81094ac36c2f564f3f3fca029 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 23 May 2016 01:47:11 +0200 Subject: [PATCH] gnu: Add poppler-qt5. * gnu/packages/pdf.scm (poppler-qt5):

[PATCH] gnu: Add texmaker.

2016-05-22 Thread Roel Janssen
17 00:00:00 2001 From: Roel Janssen Date: Mon, 23 May 2016 01:53:20 +0200 Subject: [PATCH] gnu: Add texmaker. * gnu/local.mk (GNU_SYSTEM_MODULES): Add texmaker entry. * gnu/packages/texmaker.scm: New file. --- gnu/local.mk | 1 + gnu/packages/texmaker.

Re: [PATCH] gnu: Add r-zoo.

2016-05-23 Thread Roel Janssen
Leo Famulari writes: > On Mon, May 09, 2016 at 01:18:08PM +0200, Roel Janssen wrote: >> * gnu/packages/statistics.scm (r-zoo): New variable. > > Thanks, looks good! > > The patch no longer applies. Can you rebase it on the current master > branch and re-send? Thanks for

Re: [PATCH] gnu: Add r-edger.

2016-05-23 Thread Roel Janssen
Efraim Flashner writes: > On Mon, May 23, 2016 at 09:33:28AM +0200, Ricardo Wurmus wrote: >> >> Leo Famulari writes: >> >> > On Tue, May 03, 2016 at 09:36:28AM +0200, Roel Janssen wrote: >> >> * gnu/packages/bioinformatics.scm (r-edger): New vari

Re: [PATCH] gnu: Add ParDRe.

2016-05-23 Thread Roel Janssen
uent procedures with the dataset (e.g., assemblies, mappings, etc.)." into: "This tool lets users avoid the analysis of unnecesarry reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.)." > +(home-page "https://sourceforge.net/projects/pardre/";) > +(license license:gpl3+))) > + > (define-public bio-locus >(package > (name "bio-locus") Kind regards, Roel Janssen

Re: [PATCH] gnu: Add poppler-qt5.

2016-05-23 Thread Roel Janssen
Efraim Flashner writes: > On Mon, May 23, 2016 at 01:56:17AM +0200, Roel Janssen wrote: >> Dear Guix, >> >> I need poppler-qt5 for Texmaker (see other patch), so here is a patch: >> >> >From ef330ec9125246f81094ac36c2f564f3f3fca029 Mon Sep 17 00:00:00 2001

Re: [PATCH] gnu: Add texmaker.

2016-05-23 Thread Roel Janssen
Efraim Flashner writes: > On Mon, May 23, 2016 at 01:59:07AM +0200, Roel Janssen wrote: >> Dear Guix, >> >> For the lack of a better place, I created a new file for texmaker. >> Maybe we should consider moving all LaTeX-related stuff into latex.scm. >> &g

Re: [PATCH] gnu: Add texmaker.

2016-05-23 Thread Roel Janssen
>From fc657a31b4a52628c09a0b634c49b71cce2230bc Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 24 May 2016 00:14:59 +0200 Subject: [PATCH 1/2] gnu: Rename texlive to tex. * gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm. * gnu/packages/texlive.scm: Rename file to tex.

Re: [PATCH] gnu: Add r-edger.

2016-05-23 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> Efraim Flashner writes: >> >>> On Mon, May 23, 2016 at 09:33:28AM +0200, Ricardo Wurmus wrote: >>>> >>>> Leo Famulari writes: > > [...] > >>>> All previous releases m

Re: [PATCH 1/2] gnu: Rename texlive to tex.

2016-05-24 Thread Roel Janssen
John Darrington writes: > On Tue, May 24, 2016 at 12:14:59AM +0200, Roel Janssen wrote: > * gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm. > * gnu/packages/texlive.scm: Rename file to tex.scm. > * gnu/packages/tex.scm: Renamed from texlive.scm.

Re: [PATCH 1/2] gnu: Rename texlive to tex.

2016-05-24 Thread Roel Janssen
John Darrington writes: > On Tue, May 24, 2016 at 10:59:14AM +0200, Roel Janssen wrote: > > John Darrington writes: > > > On Tue, May 24, 2016 at 12:14:59AM +0200, Roel Janssen wrote: > > * gnu/local.mk (GNU_SYSTEM_MODULES): Rename t

Re: [PATCH] gnu: Add texmaker.

2016-05-24 Thread Roel Janssen
>From d8638ddcfa7357168f542f626579eba9b6c5286b Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 24 May 2016 21:18:53 +0200 Subject: [PATCH 1/2] gnu: Rename texlive module to tex. * gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm. * gnu/packages/texlive.scm: Rename file

Re: [PATCH] gnu: Add r-edger.

2016-05-24 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > > [...] > >>>> This can be completely automated, so I don't think it has to be a lot of >>>> work: >>>> 1. guix package --export-source-tarballs=/var/www/public_html/ >>> >>

Re: [PATCH] gnu: Add texmaker.

2016-05-26 Thread Roel Janssen
Ludovic Courtès writes: > Hello! > > Roel Janssen skribis: > >> Ludovic Courtès writes: > > [...] > >>> I think it would help now if you could access the repo directly. :-) >>> >>> What’s your Savannah account? Please make sure to upload y

Re: [PATCH]:Resend: Add LLVM, clang and clang-runtime-3.8 to GNU Guix

2016-05-26 Thread Roel Janssen
e-from-llvm > + llvm-3.8 > + "1c2nkp9563873ffz22qmhc0wakgj428pch8rmhym8agjamz3ily8")) > + > +(define-public clang-3.8 > + (clang-from-llvm llvm-3.8 clang-runtime-3.8 > + "1ybcac8hlr9vl3wg8s4v6cp0c0qgqnwprsv85lihbkq3vqv94504")) > -- > 2.7.4 Thank you, Roel Janssen

Re: [PATCH]:Resend: Add LLVM, clang and clang-runtime-3.8 to GNU Guix

2016-05-28 Thread Roel Janssen
kfybl4qfxdx3qlyays2-cfe-3.8.0.src.tar.xz.drv' failed to produce output path `/gnu/store/f0jccijb05rpw0vsfv8b57j67fsh5q29-cfe-3.8.0.src.tar.xz' Kind regards, Roel Janssen

[PATCH] gnu: Add gparted.

2016-05-28 Thread Roel Janssen
Kind regards, Roel Janssen >From d9ded46817468a6b63f648efbe9aa2a2dee59c93 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Sat, 28 May 2016 17:42:22 +0200 Subject: [PATCH] gnu: Add gparted. * gnu/packages/disk.scm (gparted): New variable. (parted, fdisk, ddrescue, dosfstools, sdparm, idle3-too

Re: [PATCH] gnu: Add gparted.

2016-05-28 Thread Roel Janssen
Hello Leo, Thank you for your quick response. Leo Famulari writes: > On Sat, May 28, 2016 at 05:52:16PM +0200, Roel Janssen wrote: >> Dear Guix, >> >> I wonder if my ChangeLog-format commit message is OK this way. > > How about wording it as in bf50f7b5870? I do

Re: [PATCH] gnu: Add gparted.

2016-05-28 Thread Roel Janssen
Leo Famulari writes: > On Sat, May 28, 2016 at 08:34:19PM +0200, Roel Janssen wrote: >> Leo Famulari writes: >> > On Sat, May 28, 2016 at 05:52:16PM +0200, Roel Janssen wrote: >> I tested with a USB drive. I could create a new partition table and a >> new partition

[PATCH] gnu: Add sparql-query.

2016-06-07 Thread Roel Janssen
Hello Guix, This patch adds sparql-query. I carefully tried to make it as clean and clear as possible. Is it OK to push? Kind regards, Roel Janssen >From 883355fe91e7ab5f045b40c5ffbbb63a6c626842 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 7 Jun 2016 11:27:53 +0200 Subject: [PA

Re: Question: purging a package from the store

2016-06-08 Thread Roel Janssen
nu/store/...-gtk+-3.18.2/ (add the specific package path after --delete). A package can only be purged when it is not installed in any profile. Kind regards, Roel Janssen

Re: Everything segfaults

2016-06-09 Thread Roel Janssen
ing a program from your Guix profile using strace? So, running it as normal, but then prepend "strace", like: strace git log It may help figuring out what goes wrong. Maybe this question belongs to help-g...@gnu.org instead. Kind regards, Roel Janssen

How to deal with system-wide state databases

2016-06-10 Thread Roel Janssen
kage way? Kind regards, Roel Janssen

Re: [PATCH] gnu: Add sparql-query.

2016-06-10 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >>>From 883355fe91e7ab5f045b40c5ffbbb63a6c626842 Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 7 Jun 2016 11:27:53 +0200 >> Subject: [PATCH] gnu: Add sparql-query. >> >> * gnu/packag

[PATCH] gnu: Add emacs-rainbow-delimiters

2016-06-11 Thread Roel Janssen
Dear Guix, Here's a trivial patch to add rainbow-identifiers that even makes bad code look pretty ;). Is it OK to push? Kind regards, Roel Janssen >From 0725af80a8ffb923ede63ac31a61ac245a8a594b Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Sat, 11 Jun 2016 16:25:42 +0200 Subject

Re: [PATCH] gnu: Add emacs-rainbow-delimiters

2016-06-12 Thread Roel Janssen
Alex Kost writes: > Roel Janssen (2016-06-11 17:33 +0300) wrote: > >> Dear Guix, >> >> Here's a trivial patch to add rainbow-identifiers that even makes bad >> code look pretty ;). >> >> Is it OK to push? > > I think it's OK, except...

Re: How to deal with system-wide state databases

2016-06-13 Thread Roel Janssen
Ludovic Courtès writes: > Hello! > > Roel Janssen skribis: > >> How should we deal with mechanisms like this? Should I change the >> scrollkeeper >> database directory per program, so in this case it becomes: >> /gnu/store/xgbvyqs...-gparted-0.26.0/var/l

Re: How to deal with system-wide state databases

2016-06-13 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> Ludovic Courtès writes: >> >>> Hello! >>> >>> Roel Janssen skribis: >>> >>>> How should we deal with mechanisms like this? Should I change the >>>> scrollkee

Re: Workflow management with GNU Guix

2016-06-14 Thread Roel Janssen
Hello all, Thank you for your replies. I will use Ricardo's response to reply to. Ricardo Wurmus writes: > (Resending this as it could not be delivered.) > > Ricardo Wurmus writes: > >> Hi Roel, >> >>> With GNU Guix we are able to install programs to our machines with an >>> amazing >>> level

[PATCH] gnu: Add emacs-eprime

2016-07-03 Thread Roel Janssen
OK to push. Thank you for your time. Kind regards, Roel Janssen >From 725447eb40aad3be64d9caade294927d1a7877f1 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Sun, 3 Jul 2016 18:53:33 +0200 Subject: [PATCH] gnu: Add emacs-eprime * gnu/packages/emacs.scm (emacs-eprime): New variable. ---

[PATCH] gnu: Add scrollkeeper.

2016-07-04 Thread Roel Janssen
Dear Guix, As you may know, I am trying to package GParted. It uses Scrollkeeper for its help function, so I'd like to add it to the distribution already. If it's fine with you, I will continue to push this to the repository. As always, thank you for your time. Kind regards, Ro

Re: [PATCH 0/2] gnu: Add EMBOSS.

2016-07-04 Thread Roel Janssen
Hello Ricardo, Wow this is cool. I thought EMBOSS had a lot more dependencies than described in the provided patches. This looks very clean. Nice work :) Kind regards, Roel Janssen Ricardo Wurmus writes: > Hi Guix, > > this patch set adds the bioinformatics package EMBOSS along w

Re: [PATCH] gnu: Add scrollkeeper.

2016-07-04 Thread Roel Janssen
Leo Famulari writes: > On Mon, Jul 04, 2016 at 10:04:58AM +0200, Roel Janssen wrote: >> Dear Guix, >> >> As you may know, I am trying to package GParted. It uses Scrollkeeper >> for its help function, so I'd like to add it to the distribution >> already.

[PATCH] gnu: Add perltidy.

2016-07-05 Thread Roel Janssen
Dear Guix, Here I have a package recipe for perltidy. The version number differs from the usual scheme, but that's what the project uses, so I cannot do much about it. Is this OK to push? As always, thanks for your time. Kind regards, Roel Janssen

Re: [PATCH] gnu: Add perltidy.

2016-07-05 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> Here I have a package recipe for perltidy. The version number differs >> from the usual scheme, but that's what the project uses, so I cannot do >> much about it. > > I don’

[PATCH] gnu: Add emacs-ess.

2016-07-05 Thread Roel Janssen
"out" and "doc", and substitute/patch the involved Makefiles? You can find the patch below. Kind regards, Roel Janssen >From 0beacae7c386ea032cfac4511f4a9bc313fb1fb9 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 5 Jul 2016 14:53:03 +0200 Subject: [PATCH] gnu

Re: [PATCH] gnu: Add emacs-ess.

2016-07-05 Thread Roel Janssen
Ben Woodcroft writes: > Hi. > > On 05/07/16 20:56, Roel Janssen wrote: >> Dear Guix, >> >> I have a question about the following patch to add emacs-ess. > > Thanks, I was also making a half-hearted attempt at this. Sorry for the duplicated effort. I am happy

Re: [PATCH] gnu: Add perltidy.

2016-07-05 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> Ricardo Wurmus writes: >> >>> Roel Janssen writes: >>> >>>> Here I have a package recipe for perltidy. The version number differs >>>> from the usual scheme, but that's what the

Re: [PATCH]:Resend: Add LLVM, clang and clang-runtime-3.8 to GNU Guix

2016-07-05 Thread Roel Janssen
Thanks again! Kind regards, Roel Janssen >From 451d93eaaab6166e38e33f0556fe40f83afefc5c Mon Sep 17 00:00:00 2001 From: brainiarc7 Date: Tue, 5 Jul 2016 22:42:24 +0200 Subject: [PATCH] gnu: Add LLVM 3.8. * gnu/packages/llvm.scm (llvm-3.8): New variable. * gnu/packages/llvm.scm (clang-run

Re: [PATCH]:Resend: Add LLVM, clang and clang-runtime-3.8 to GNU Guix

2016-07-05 Thread Roel Janssen
Does everyone agree that the proposed patch is fine? Dennis Mungai writes: > Roel, you may push. > > Also, I prefer the name Dennis Mungai. > > :-) > > On 5 July 2016 at 23:48, Roel Janssen wrote: >> Hello Dennis, >> >> Thanks for your work on LLVM-3.8. I

Re: [PATCH] gnu: Add emacs-ess.

2016-07-06 Thread Roel Janssen
Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 5 Jul 2016 14:53:03 +0200 >> Subject: [PATCH] gnu: Add emacs-ess. >> >> * gnu/packages/emacs.scm (emacs-ess): New variable. >> --- >> gnu/packages/emacs.scm | 45 +++

Re: [PATCH] gnu: Add emacs-ess.

2016-07-06 Thread Roel Janssen
p > texlive and make it find modules via some search path. I’m afraid this > might take a long time. Does that mean we should put emacs-ess on hold until we have fixed this? Thanks, Roel Janssen

Re: [PATCH] gnu: Add emacs-ess.

2016-07-06 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> Ricardo Wurmus writes: >> >>> Hi Roel, >>> >>>>> As Ben wrote “texlive-minimal” might be sufficient. Please also move >>>>> these two to “native-inputs” if that’s possible. &

Re: [PATCH] gnu: Add emacs-ess.

2016-07-10 Thread Roel Janssen
after it worked on the pari-gp > package with which I made the tests... I was thinking about packaging the fonts separately, but I haven't at all looked at whether that is a sane thing to do. Do you have a particular list of packages where texlive-minimal fails to be sufficient to build documentation, or can I generate that list by looking for the texlive input? Kind regards, Roel Janssen

Re: [PATCH] gnu: Add perltidy.

2016-07-10 Thread Roel Janssen
pt and writes an indented, reformatted script. So even though it does provide a Perl::Tidy module, it's also a stand-alone program that reformats existing Perl code. What we could to is split the package in two: one with the Perl::Tidy module (called perl-tidy) and one with the stand-alone script (called perltidy). I think that would be a little confusing though. Kind regards, Roel Janssen

Re: [PATCH] gnu: Add emacs-ess.

2016-07-10 Thread Roel Janssen
Andreas Enge writes: > On Sun, Jul 10, 2016 at 12:39:37PM +0200, Roel Janssen wrote: >> I was thinking about packaging the fonts separately, but I haven't at >> all looked at whether that is a sane thing to do. Do you have a >> particular list of packages where t

Re: [PATCH 00/17] Emacs packages!

2016-07-13 Thread Roel Janssen
++ > 1 file changed, 399 insertions(+) These look good to me. I noticed that you start the description string on a new line on most of these packages. Is that on purpose? Kind regards, Roel Janssen

Re: [PATCH 17/17] gnu: Add emacs-solarized-theme.

2016-07-13 Thread Roel Janssen
parens >(package > (name "emacs-smartparens") After installing this package I tried to `M-x load-theme solarized'. That resulted in the error: `Undefined Custom theme solarized'. However, `solarized-dark' works fine. Could you verify that `M-x load-theme solarized' works on your end? Kind regards, Roel Janssen

Re: [PATCH 17/17] gnu: Add emacs-solarized-theme.

2016-07-13 Thread Roel Janssen
Ricardo Wurmus writes: > Roel Janssen writes: > >> Ricardo Wurmus writes: >> >>> * gnu/packages/emacs.scm (emacs-solarized-theme): New variable. >>> --- >>> gnu/packages/emacs.scm | 24 >>> 1 file changed, 24 inser

Re: [PATCH 0/3] icedtea: Generate keystore.

2016-07-18 Thread Roel Janssen
Ricardo Wurmus writes: > Hi Guix, > > our current IcedTea packages don't have TLS/SSL support as they don't come > with a certificate store. In the Java world we need to import certificates > into a keystore. (This is, unfortunately, not reproducible.) > > These there patches add a build phase

Re: none

2016-07-22 Thread Roel Janssen
t of trying to do so. Maybe we could create an online course to do packaging with GNU Guix and make it rewarding with a grading system and giving achievement points.. That might make the incentive to make the upstreaming step of packaging more fun and more like a learning process rather than a recurrent PITA. (This is something I could spend time at..) Kind regards, Roel Janssen

Re: [PATCH] gnu: Add libsmpeg.

2016-07-23 Thread Roel Janssen
stall-lib, we can provide the correct path. (replace 'install (lambda* (#:key outputs #:allow-other-keys) (system* "python" "setup.py" "install" (string-append "--install-lib="

Odd behavior with --dry-run and --upgrade

2016-07-23 Thread Roel Janssen
think the behavior of --dry-run should be changed to not graft things by default? And if so, do you have a pointer where I could find the problematic code? I couldn't find anything particularly odd because the code involved has a `dry-run?' condition pretty much everywhere it matters.

Broken Calibre package

2016-07-25 Thread Roel Janssen
ib/calibre/calibre/gui2/comments_editor.py", line 18, in from PyQt5.QtWebKitWidgets import QWebView, QWebPage ImportError: No module named QtWebKitWidgets Are we missing a qtwebkit package? Kind regards, Roel Janssen

Re: Broken Calibre package

2016-07-25 Thread Roel Janssen
odular Qt. So I re-added the previous version > as python2-pyqt-5.5. I am going to push in a moment. Thanks for your very quick response and solution! Kind regards, Roel Janssen

Re: Odd behavior with --dry-run and --upgrade

2016-07-25 Thread Roel Janssen
Ludovic Courtès writes: > Hi! > > Alex Kost skribis: > >> Roel Janssen (2016-07-23 18:11 +0300) wrote: >> >>> Dear Guix, >>> >>> For some time now, running `guix package --dry-run --upgrade' results in >>> build actions involving

Re: Odd behavior with --dry-run and --upgrade

2016-07-26 Thread Roel Janssen
Ludovic Courtès writes: > Roel Janssen skribis: > >> Ludovic Courtès writes: >> >>> Hi! >>> >>> Alex Kost skribis: >>> >>>> Roel Janssen (2016-07-23 18:11 +0300) wrote: >>>> >>>>> Dear Guix, >

Re: Ricardo Wurmus appointed co-maintainer

2016-07-26 Thread Roel Janssen
for joining, Ricardo! > > Ludo’. Congratulations Ricardo! This is absolutely great news. :) Kind regards, Roel Janssen

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