* gnu/packages/statistics.scm (r): Update to 3.3.2.
---
gnu/packages/statistics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6cdd694..72c5430 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packag
* gnu/packages/statistics.scm (r): Update to 3.3.2.
---
gnu/packages/statistics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6cdd694..72c5430 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm
b/gnu/packages/bioinformatics.scm
index 3e9c82f..1b6532b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4924,7 +4924,7
, good to see you here.
>
> On 17/12/16 03:16, Ra wrote:
>
> * gnu/packages/statistics.scm (r): Update to 3.3.2.
>
> I successfully built R and all of its 243 dependencies on x86_64, and
> except for the previously failing shogun, all built successfully. So I
> think it is
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm
b/gnu/packages/bioinformatics.scm
index 3e9c82f..43bf701 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7848,14 +7848,
[PATCH] gnu: multiqc: Update to 0.8.
is [PATCH 1/2] for this message, sorry for the mistake.
Running multiqc without [PATCH 2/2] systems say that matplotlib requires
nose>=0.11.1, so I added it to the propagated inputs.
---
gnu/packages/bioinformatics.scm | 3 ++-
1 file changed, 2 insertions(+),
"make clean; ./bootstrap &&
./configure --localstatedir=/var
&& make -j4"
ln -s ~/guix ~/.config/guix/latest
guix package -u
maybe the git/source install should be documented as well or at least
tested from scratch for newbies such as me.
--
Ra
Hi Ben,
thanks I will investigate. Does it mean that multiqc is in stand by for now
?
On Fri, Dec 23, 2016 at 2:30 PM Ben Woodcroft wrote:
> Hi Raoul,
>
> Thanks for the patches.
>
> On 19/12/16 07:36, Ra wrote:
> > [PATCH] gnu: multiqc: Update to 0.8.
> > is [PATCH 1
Hi Ricardo,
On Tue, Dec 27, 2016 at 5:02 PM Ricardo Wurmus wrote:
Hi Raoul,
> in attachment a patch for the inclusion of an R/Bioconductor library
named
> "scran" https://bioconductor.org/packages/release/bioc/html/scran.html ,
> scran has a lot of dependencies and I placed those related to
>
On Tue, Dec 27, 2016 at 6:00 PM Ricardo Wurmus wrote:
>
> Ra writes:
>
> > guix import cran --archive=bioconductor scater
> >
> > I had to add the missing dependencies by hand, is there a recursive way
> to do so?
>
> Yes, you can just pass “--recursive” or “
:06 PM Ra wrote:
> On Tue, Dec 27, 2016 at 6:00 PM Ricardo Wurmus wrote:
>
>
> Ra writes:
>
> > guix import cran --archive=bioconductor scater
> >
> > I had to add the missing dependencies by hand, is there a recursive way
> to do so?
>
> Yes, you c
Hi Ricardo,
there was an issue with the r-shiny patch, the license was wrong. So this
is the new set of patches.
On Tue, Dec 27, 2016 at 10:25 PM Ra wrote:
> Dear Ricardo,
> I try to satisfy all the requirements. What do you think ?
> In attachment the patches.
>
> Shiny no
Hi Ben,
reading the comments from https://github.com/ewels/MultiQC/issues/376
it seems that in the upcoming release they will solve the problem.
Are we going to wait for the next v. 1.0 or include it now and update later
?
--
Ra
On Mon, Dec 26, 2016 at 1:18 PM Ben Woodcroft wrote:
> Hi Ra
* gnu/packages/statistics.scm (r-randomforest): New variable.
---
gnu/packages/statistics.scm | 23 +++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 40a511b..f5041a8 100644
--- a/gnu/packages/statistics.scm
+
* gnu/packages/perl.scm (perl-parallel-forkmanager): New variable.
---
gnu/packages/perl.scm | 26 ++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 8f103ec..532e360 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/package
Hi Marius,
On Thu, Jan 12, 2017 at 9:27 PM Marius Bakke wrote:
> Ra writes:
>
> > * gnu/packages/perl.scm (perl-parallel-forkmanager): New variable.
>
> Thanks! This looks mostly good, see comments below. Can you send an
> updated patch that also includes copyright i
* gnu/packages/statistics.scm (r-gmodels): New variable.
---
gnu/packages/statistics.scm | 19 +++
1 file changed, 19 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index db1a687..45d8d23 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/pack
* gnu/packages/bioinformatics.scm (r-sva): New variable.
---
gnu/packages/bioinformatics.scm | 35 +++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm
b/gnu/packages/bioinformatics.scm
index d82b6c0..c6acab1 100644
--- a/gnu/packages/b
Hi Ricardo,
On Fri, Jan 13, 2017 at 10:52 PM Ricardo Wurmus wrote:
> Ra writes:
>
> > * gnu/packages/bioinformatics.scm (r-sva): New variable.
> > ---
> > gnu/packages/bioinformatics.scm | 35 +++
> > 1 file changed, 35 insertio
On Fri, Jan 13, 2017 at 11:31 PM Leo Famulari wrote:
> On Fri, Jan 13, 2017 at 10:55:29PM +0100, Ricardo Wurmus wrote:
> >
> > Ra writes:
> >
> > > * gnu/packages/statistics.scm (r-gmodels): New variable.
> > > ---
> > > gnu/packages/stati
* gnu/packages/statistics.scm (r-rann): New variable.
---
gnu/packages/statistics.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index db1a687..695f6ed 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packa
Ouch ,
actually I just cut and pasted the text from a shell and sending it with
inbox. Sorry for that and thanks for spot it.
Ra
Il sab 14 gen 2017 18:19 Ludovic Courtès ha scritto:
> Hi!
>
> Ricardo Wurmus skribis:
>
> > Ra writes:
> >
> >> * gnu/package
On Sat, Jan 14, 2017 at 8:51 PM Ra wrote:
> Ouch ,
> actually I just cut and pasted the text from a shell and sending it with
> inbox. Sorry for that and thanks for spot it.
>
> Ra
>
> Il sab 14 gen 2017 18:19 Ludovic Courtès ha scritto:
>
> Hi!
>
> Ricardo
Hi,
I think I need your help to identify the right license for this package, I
set bsd-3 only for convenience this is the original license (
https://github.com/pachterlab/kallisto/blob/master/license.txt)
Do I need to use something like :
(license (license:non-copyleft "file://src/COPYING"
er version ? In both cases, I should find a way to have a different
branch/repo for "special" packages.
--
Ra
>
> Cheers,
> Alex
>
>
> Ra writes:
>
> > Hi,
> > I think I need your help to identify the right license for this package,
> I set bsd-3 onl
hub.com/tderrien/FEELnc,
https://github.com/Teichlab/tracer ( and Trinity). Does it make sense to
contribute to https://github.com/BIMSBbioinfo/ or do you suggest to go with
a personal/independent repo ?
--
Ra
> --
> Ricardo
>
> GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC
> https://elephly.net
>
>
mething strange on my side.
Doing this (modifying the code to refer to external commands by absolute
file names) is preferable over propagating inputs, because it avoids
clobbering user profiles.
Thanks.
Ra
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