Re: [PATCH] gnu: Add proxychains-ng.

ng0 writes: > Ricardo Wurmus writes: >> Could you show us the error message in case of using >> “#:configure-flags”? This really should work, so if it fails I’d like >> to fix this instead of working around it, if possible. […] Thanks. Looks like you need to set the “prefix” variable in #:

Re: [PATCH] gnu: Add dlib.

Marius Bakke (2016-08-14 22:52 +0300) wrote: Hello and welcome! > From 5e30eff1cf24b236a78cc5abed870992e84f443f Mon Sep 17 00:00:00 2001 > From: Marius Bakke > Date: Sat, 13 Aug 2016 11:26:10 +0100 > Subject: [PATCH] gnu: Add dlib. [...] > +(define-public dlib > + (package > +(name "dlib")

[PATCH] PRELIMINARY: Add support for hibernation.

Hello Guix, Here's a preliminary patch to add support for hibernation. To enable it, you'll also need to add a line like this to your 'operating-system' definition. (kernel-arguments '("resume=/dev/sda2")) Where the device named is a swap partition. WARNING: Since this is preliminary work, I

Re: [PATCH] gnu: Add proxychains-ng.

Ricardo Wurmus writes: > ng0 writes: > >> Ricardo Wurmus writes: > >>> Could you show us the error message in case of using >>> “#:configure-flags”? This really should work, so if it fails I’d like >>> to fix this instead of working around it, if possible. > > […] > > Thanks. Looks like you n

Re: [PATCH] gnu: Add proxychains-ng.

Ricardo Wurmus writes: > ng0 writes: > >> Ricardo Wurmus writes: > >>> Could you show us the error message in case of using >>> “#:configure-flags”? This really should work, so if it fails I’d like >>> to fix this instead of working around it, if possible. > > […] > > Thanks. Looks like you n

Re: Feedback, ideas, discussion: tracking patches, discussions, bugs.

> I still like the idea of distributed source repos. You may also have > noticed there was resistance to that idea. I thought that the resistance was towards stabilizing an internal api, which I'm also against. But I'll have to reread the thread more carefully if you see things differently. I thin

Re: [PATCH] gnu: Add proxychains-ng.

ng0 writes: > Ricardo Wurmus writes: > >> ng0 writes: >> >>> Ricardo Wurmus writes: >> Could you show us the error message in case of using “#:configure-flags”? This really should work, so if it fails I’d like to fix this instead of working around it, if possible. >> >> […] >>

Re: [PATCH] gnu: Add proxychains-ng.

Ricardo Wurmus writes: > ng0 writes: > >> Ricardo Wurmus writes: >> >>> ng0 writes: >>> Ricardo Wurmus writes: >>> > Could you show us the error message in case of using > “#:configure-flags”? This really should work, so if it fails I’d like > to fix this instead of working

Re: [PATCH] gnu: Add proxychains-ng.

ng0 writes: > Ricardo Wurmus writes: >> + (modify-phases %standard-phases >> + (add-after 'unpack 'fix-configure-script >> + (lambda _ >> + ;; The configure script is very intolerant to unknown >> arguments, >> + ;; such as "CONFIG_SHELL". >> +

[PATCH] gnu: avr: Use the correct gcc version as native-input. This makes crtatmega32u4.o etc appear in the output.

See also , . The easy fix would have been to pass "--enable-device-lib" to libc's configure. The right

Re: Our git just broke

On 15/08/16 11:08, Mark H Weaver wrote: Leo Famulari writes: On Sun, Aug 14, 2016 at 02:28:43PM +1000, Ben Woodcroft wrote: On 14/08/16 03:28, Pjotr Prins wrote: Also gnutls does not pass it's tests on my system, nor does subversion. Both gnutls and subversion are substituted for me on cu

Re: [PATCH] gnu: avr: Use the correct gcc version as native-input. This makes crtatmega32u4.o etc appear in the output.

On Mon, Aug 15, 2016 at 6:45 AM, Danny Milosavljevic wrote: > > See also > , > . > > The easy fix would

Re: [PATCH] gnu: Add dlib.

>> +(build-system cmake-build-system) >> +(arguments >> + `(#:phases >> + (let ((test-dir (string-append "../dlib-" ,version >> "/dlib/test/build"))) > > I think it's better to move this 'let' inside the phase: ... > >> + (modify-phases %standard-phases >> + (r

Re: Feedback, ideas, discussion: tracking patches, discussions, bugs.

Am 13.08.2016 um 12:46 schrieb David Craven: > I think a few people have said they like github, but it gets objected to > because of certain reasons and I do not want to start a discussion on > those. A good alternative could be to use gitlab, which one could host on one's own systems. It is "only

Re: [PATCH 2/5] gnu: Add avr-gcc.

Hi, when I apply my patch and then modify my Makefile to also say: CPPFLAGS += -I${HOME}/.guix-profile/avr/include -L${HOME}/.guix-profile/avr/lib/avr5 -L${HOME}/.guix-profile/avr/lib -B${HOME}/.guix-profile/avr/lib CPPFLAGS += -I.. then for Arduino (after applying my patch) I still get: Plu

Re: [PATCH] gnu: Add clojure.

Thanks for the patch. I went through it and tried to simplify it where possible. - removed unused module imports - merged some procedures - wrote an abstraction for submodules - changed comment style where necessary All proposed changes relative to your patch can be seen here: diff --git a/gnu

[PATCH] gnu: python: add pyserial.

* gnu/packages/python.scm (python-pyserial, python-pyserial2): New variables. --- gnu/packages/python.scm | 34 ++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 5cc54d0..36c5d52 100644 --- a/gnu/packages/pyth

[PATCH] gnu: Add python-reportlab.

>From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 14 Aug 2016 16:47:33 +0100 Subject: [PATCH] gnu: Add python-reportlab. * gnu/packages/python.scm (python-reportlab, python2-reportlab): New variables. --- gnu/packages/python.scm | 32

[PATCH] gnu: Add re2.

I wasn't sure where to put this, so went with its own file. It does not fully implement PCRE so pcre.scm seems inappropriate. Perhaps that could be renamed to regex.scm or similar. >From c8aa1ecab5176dc9d2b02a4063936b77039af163 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 14 Aug 2016 2

Re: [PATCH 2/5] gnu: Add avr-gcc.

On Mon, Aug 15, 2016 at 7:59 AM, Danny Milosavljevic wrote: > What does the search-paths form do? Does it set environment variables in the > profile as well? Search path information is used in build environments (guix build), user-defined environments (guix environment), and profiles (guix pack

Re: [PATCH 2/5] gnu: Add avr-gcc.

> I don't know what has changed since I got things working, but I can no > longer compile that firmware. I get errors like this: > > main.c:38:20: fatal error: avr/io.h: No such file or directory There was a change in cross-base. We don't use CROSS_CPATH anymore. However, avr-gcc does use i

Re: Feedback, ideas, discussion: tracking patches, discussions, bugs.

On Mon, 15 Aug 2016 13:53:49 +0200 Hartmut Goebel wrote: > A good alternative could be to use gitlab, which one could host on one's > own systems. It is "only" MIT licensed, but at least "open source" - in > contrast to github, which is propritary. I second the gitlab recommendation. I have mult

Re: [PATCH] gnu: Add python-reportlab.

> From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001 > From: Marius Bakke > Date: Sun, 14 Aug 2016 16:47:33 +0100 > Subject: [PATCH] gnu: Add python-reportlab. > > * gnu/packages/python.scm (python-reportlab, python2-reportlab): New > variables. > --- > gnu/packages/python.

Specifying Java version when using ant-build-system

Hi, how can I specify that I need a Java 1.8 compiler and source level when using ant-build-system? Also, guix/build-system/ant.scm says: (define* (ant-build store name inputs #:key (tests? #t) (test-target "tests")

Re: Specifying Java version when using ant-build-system

On Mon, Aug 15, 2016 at 10:17 AM, Danny Milosavljevic wrote: > Hi, > > how can I specify that I need a Java 1.8 compiler and source level when using > ant-build-system? > > Also, guix/build-system/ant.scm says: > > (define* (ant-build store name inputs > #:key >

Re: Specifying Java version when using ant-build-system

Danny Milosavljevic writes: > Hi, > > how can I specify that I need a Java 1.8 compiler and source level when using > ant-build-system? The build system adds these inputs by default: (build-inputs `(("jdk" ,jdk "jdk") ("ant" ,ant) ("z

[PATCH] gnu: Add minced.

>From 017a593d407a36ca98736b95b7413f180a7735d4 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Mon, 15 Aug 2016 16:06:37 +0100 Subject: [PATCH] gnu: Add minced. * gnu/packages/bioinformatics.scm (minced): New variable. --- gnu/packages/bioinformatics.scm | 51 ++

Re: Feedback, ideas, discussion: tracking patches, discussions, bugs.

Hi guixers, Actually, We have GNU Ethical Repository Criteria Evaluations , which was published recently (about 1 yr ago). Below is my understanding of the evaluations: The essence of the criteria

Re: [PATCH 07/11] gnu: ncurses: support mingw.

Mark H Weaver writes: Hi Mark! > As I wrote elsewhere, this patch would force about 1 rebuilds > (across all four architectures), which would rule out applying it to > master. That could very well be...I've been rebuilding quite a lot. Is there a command I can run to get (an estimate of) th

[PATCH] gnu: offlineimap: Update to 7.0.5.

Attached is a patch for offlineimap 7.0.5. >From 7a30409283dc5d87887e6a6266e544c8856ea385 Mon Sep 17 00:00:00 2001 From: Al McElrath Date: Mon, 15 Aug 2016 09:35:46 -0700 Subject: [PATCH] gnu: offlineimap: Update to 7.0.5. * gnu/packages/mail.scm (offlineimap): Update to 7.0.5. --- gnu/packages

Re: Our git just broke

On Mon, Aug 15, 2016 at 09:23:44PM +1000, Ben Woodcroft wrote: > > Leo Famulari writes: > > > Regarding GnuTLS, I assume Pjotr is describing the failure of the > > > "name-constraints" test [0]. > I'm a little confused. AIUI, this was fixed in 3.5.2 which is a part of > current master and 0.11.0.

Re: [PATCH]: gnu: gnurl: Update to 7.50.1.

On Sun, Aug 14, 2016 at 09:18:11AM +, ng0 wrote: > ng0 writes: > > ng0 writes: > >> Leo Famulari writes: > >>> Can you add a comment explaining why test1139 is disabled? Just saying > >>> that it won't work doesn't tell those reading the package why it is > >>> disabled. > >> > >> My assumpt

Re: Our git just broke

On Mon, Aug 15, 2016 at 01:11:50PM -0400, Leo Famulari wrote: > On Mon, Aug 15, 2016 at 09:23:44PM +1000, Ben Woodcroft wrote: > > > Leo Famulari writes: > > > > Regarding GnuTLS, I assume Pjotr is describing the failure of the > > > > "name-constraints" test [0]. > > > I'm a little confused. AIU

Re: [PATCH] gnu: Add libunique.

On Fri, Aug 05, 2016 at 06:44:47PM +, ng0 wrote: > Subject: [PATCH] gnu: Add libunique. > > * gnu/packages/gnome.scm (libunique): New variable. This package appears abandoned by its developers: WARNING Unique is now in maintenance mode, and its usage is strongly discouraged. Applications sho

Re: [PATCH] gnu: libextractor: Update inputs.

On Sat, Aug 06, 2016 at 12:01:01PM +, ng0 wrote: > Subject: [PATCH] gnu: libextractor: Add inputs. > > * gnu/packages/gnunet.scm (libextractor)[inputs]: Add gtk+, libarchive, > libgsf, libmpeg2. > * [arguments](configure-flags): Add flag to configure with libltdl. Thanks, pushed as cd372ca352

Re: [PATCH] gnu: offlineimap: Update to 7.0.5.

On Mon, Aug 15, 2016 at 09:54:47AM -0700, Al McElrath wrote: > Subject: [PATCH] gnu: offlineimap: Update to 7.0.5. > > * gnu/packages/mail.scm (offlineimap): Update to 7.0.5. Thanks for paying attention to this package! Pushed as d23ce1ce2b.

Re: [PATCH] gnu: Add python-pypump

On Sun, Aug 14, 2016 at 04:07:11PM -0700, Dylan Jeffers wrote: > > The latest upstream version 0.7. Is there a reason not to use the > > latest version in this case? > > For my immediate purposes, I need pypump 0.6, since thats the version > used in my projects. Since the versions are quite differ

Re: [PATCH] gnu: avr: Use the correct gcc version as native-input. This makes crtatmega32u4.o etc appear in the output.

On Mon, Aug 15, 2016 at 07:34:19AM -0400, Thompson, David wrote: > On Mon, Aug 15, 2016 at 6:45 AM, Danny Milosavljevic > wrote: > > > > See also > > , > > > >

Re: [PATCH] PRELIMINARY: Add support for hibernation.

Hi Mark, On Mon, Aug 15, 2016 at 04:03:26AM -0400, Mark H Weaver wrote: Hello Guix, Here's a preliminary patch to add support for hibernation. To enable it, you'll also need to add a line like this to your 'operating-system' definition. (kernel-arguments '("resume=/dev/sda2")) Where the dev

Re: GuixSD on ARM

Eric Bavier writes: > On Wed, 13 Jul 2016 08:55:23 +0200 > Ricardo Wurmus wrote: > >> Hi Daniel, >> >> > I'd like GuixSD on ARM plataform, for instance Libre Tea Computer Card >> > or other ARM libre plataform. >> > >> > I buy a Libre Tea Computer Card: >> > - https://www.crowdsupply.com/eoma68

Re: [PATCH] gnu: Add dlib.

On Mon, Aug 15, 2016 at 12:51:15PM +0100, Marius Bakke wrote: > Date: Sat, 13 Aug 2016 11:26:10 +0100 > Subject: [PATCH] gnu: Add dlib. > > * gnu/packages/machine-learning.scm (dlib): New variable. Thanks for the updated patch. Does it build for you? On my x86_64 machine, it fails consistently.

Re: [PATCH] gnu: Add dlib.

Leo Famulari writes: > On Mon, Aug 15, 2016 at 12:51:15PM +0100, Marius Bakke wrote: >> Date: Sat, 13 Aug 2016 11:26:10 +0100 >> Subject: [PATCH] gnu: Add dlib. >> >> * gnu/packages/machine-learning.scm (dlib): New variable. > > Thanks for the updated patch. > > Does it build for you? On my x86_

[GSoC] Porting GuixSD to GNU/Hurd Update

Hello Guix, Hello Hurd, As GSoC is coming to an end I think it's time to sum up my work till now, report issues I had and then talk about what our next steps are. First I would like to mention what were the two main objectives of the project and also what was the status of the port when the proje

Re: [PATCH] gnu: Add python-pypump

On Mon, 15 Aug 2016 14:41:28 -0400 Leo Famulari wrote: > On Sun, Aug 14, 2016 at 04:07:11PM -0700, Dylan Jeffers wrote: > > > The latest upstream version 0.7. Is there a reason not to use the > > > latest version in this case? > > > > For my immediate purposes, I need pypump 0.6, since thats t

Re: [PATCH] gnu: Add dlib.

On Mon, Aug 15, 2016 at 09:29:11PM +0100, Marius Bakke wrote: > Leo Famulari writes: > > Running test_empirical_kernel_map / phase `check' failed after 2043.7 > > seconds > > Strange, I've built this dozens of times now with no test failures > (GuixSD on amd64). Are you memory constrained by an

Re: [PATCH] gnu: Add python-pypump

> I think we should package the latest version, at least. > > Maybe we could also package 0.6 with a package 'python-pypump-0.6' that > inherits from python-pypump. Or, you could keep that inherited > python-pypump-0.6 in a private package repo, and use GUIX_PACKAGE_PATH. It depends on whether py

Re: [PATCH] gnu: Add python-pypump

On Tue, Aug 16, 2016 at 12:29:27AM +0200, Danny Milosavljevic wrote: > > I think we should package the latest version, at least. > > > > Maybe we could also package 0.6 with a package 'python-pypump-0.6' that > > inherits from python-pypump. Or, you could keep that inherited > > python-pypump-0.6

Re: [PATCH]: gnu: gnurl: Update to 7.50.1.

Leo Famulari writes: > On Sun, Aug 14, 2016 at 09:18:11AM +, ng0 wrote: >> ng0 writes: >> > ng0 writes: >> >> Leo Famulari writes: >> >>> Can you add a comment explaining why test1139 is disabled? Just saying >> >>> that it won't work doesn't tell those reading the package why it is >> >>>

Re: [PATCH] gnu: Add libunique.

Leo Famulari writes: > [ Unknown signature status ] > On Fri, Aug 05, 2016 at 06:44:47PM +, ng0 wrote: >> Subject: [PATCH] gnu: Add libunique. >> >> * gnu/packages/gnome.scm (libunique): New variable. > > This package appears abandoned by its developers: I am aware of that, as I pointed out

Re: [PATCH]: gnu: gnurl: Update to 7.50.1.

On Mon, Aug 15, 2016 at 11:24:37PM +, ng0 wrote: > Leo Famulari writes: > > Will you file a bug report with the gnurl developers about this failing > > test and reply to this email with a link to the bug report? > > yes I will do so and see who can fix it. Thank you! > > Ideally, the packag

Re: [PATCH] gnu: Add dlib.

On 16/08/16 08:28, Leo Famulari wrote: On Mon, Aug 15, 2016 at 09:29:11PM +0100, Marius Bakke wrote: Leo Famulari writes: Running test_empirical_kernel_map / phase `check' failed after 2043.7 seconds Strange, I've built this dozens of times now with no test failures (GuixSD on amd64). Are you

Re: [PATCH] gnu: python: add pyserial.

On Mon, Aug 15, 2016 at 02:25:01PM +0200, Danny Milosavljevic wrote: > > * gnu/packages/python.scm (python-pyserial, python-pyserial2): New variables. Thank for this package! > + (uri (string-append > + "https://pypi.python.org/packages/"; > + > "3c/d8/a9fa247ca60b0

Re: [PATCH] gnu: Add python-reportlab.

On Mon, Aug 15, 2016 at 03:01:00PM +0100, Marius Bakke wrote: > > > From c95b25a3ad4902ccdef79c7429485a7cacc72e1c Mon Sep 17 00:00:00 2001 > > From: Marius Bakke > > Date: Sun, 14 Aug 2016 16:47:33 +0100 > > Subject: [PATCH] gnu: Add python-reportlab. > > > > * gnu/packages/python.scm (python-rep

Re: Specifying Java version when using ant-build-system

On Mon, Aug 15, 2016 at 04:42:01PM +0200, Ricardo Wurmus wrote: > > (define* (ant-build store name inputs [...] > > (guile #f)p > > ^^^ what does this mean? > > Ouch! This shouldn’t have been committed. This is what happened pretty > often with

[PATCH v2] gnu: python: Add pyserial.

gnu: python: Add pyserial. * gnu/packages/python.scm (python-pyserial, python-pyserial2): New variables. --- gnu/packages/python.scm | 29 + 1 file changed, 29 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 5cc54d0..8a2f094 100644 -

Re: [PATCH] gnu: Add minced.

Hi Marius, Excellent to see others interested in packaging microbial bioinformatics tools. I tried this in a container and it seems that it calls out to a few programs preventing it from working: [env]# minced -h /gnu/store/8asw2i54x53rrwdr8qw4j2rpbkc9fqzz-profile/bin/minced: line 7: dirn

Re: [PATCH] Patchseries: perl-www-opensearch and dependencies.

On Sun, 14 Aug 2016 17:19:10 + ng0 wrote: > This patch series adds perl-www-opensearch and the 13 patches leading to > it (the dependencies). Thanks for all the patches! Comments dispersed throughtout: > > > From 32adba9d07c73aee701861817b530a8a54ce065d Mon Sep 17 00:00:00 2001 > From: n

Re: [PATCH] gnu: Add NetSurf.

On Thu, 11 Aug 2016 07:59:15 -0500 ericbav...@openmailbox.org wrote: > From: Eric Bavier > > * gnu/packages/web.scm (netsurf): New variable. > --- > gnu/packages/web.scm | 111 > +++ > 1 file changed, 111 insertions(+) Updated patch attached. `

Re: [PATCH] gnu: Add minced.

Hi again, On 16/08/16 14:59, Ben Woodcroft wrote: [..] +(home-page"https://github.com/ctSkennerton/minced";) +(synopsis "Mining CRISPRs in Environmental Datasets") +(description + "MinCED is a program to find Clustered Regularly Interspaced Short +Palindromic Repeats (CRISPRs)