Steve Sprang skribis:
> I added newlines to split up output and visually separate multiple
> substitutions. Since the download size is unknown, we can't use a progress
> bar, but I made the output more consistent with the progress bar behavior.
> I also shortened the hash after it's been repeated
>From d94bf0b05b3ccffc3a03e06586f8fa43d8dacc23 Mon Sep 17 00:00:00 2001
From: Stefan Reichoer
Date: Tue, 15 Sep 2015 10:39:49 +0200
Subject: [PATCH] gnu: Add ifstatus.
* gnu/packages/networking.scm (ifstatus): New variable.
---
gnu/packages/networking.scm | 45 +++
* gnu/packages/ruby.scm (ruby-libxml): New variable.
* gnu/packages/bioinformatics.scm (bioruby): New variable.
---
gnu/packages/bioinformatics.scm | 47 +
gnu/packages/ruby.scm | 26 +++
2 files changed, 73 insertions(+
* gnu/packages/ruby.scm (ruby-libxml): New variable.
* gnu/packages/bioinformatics.scm (bioruby): New variable.
---
gnu/packages/bioinformatics.scm | 47 +
gnu/packages/ruby.scm | 26 +++
2 files changed, 73 insertions(+
On Tue, Sep 15, 2015 at 08:58:28AM -0400, Thompson, David wrote:
> > +(native-inputs `(("ruby-libxml" ,ruby-libxml)))
>
> This should be a propagated input.
oops. I can be such a noob.
> > +(inputs
> > + `(("coreutils" ,coreutils) ; required for /bin/echo in tests
>
> Coreutils is
On Tue, Sep 15, 2015 at 8:15 AM, Pjotr Prins wrote:
> * gnu/packages/ruby.scm (ruby-libxml): New variable.
> * gnu/packages/bioinformatics.scm (bioruby): New variable.
> ---
> gnu/packages/bioinformatics.scm | 47
> +
> gnu/packages/ruby.scm
Sorry for the double mail. I just got round to using command line
mailing patches and hit enter twice.
Anyway, the bioruby package works with many tests :).
ruby-libxml, meanwhile, installs fine but its tests depend on the
shared library that needs to get built and installed. Anyone dealt
with
Ludovic Courtès (2015-09-14 15:02 +0300) wrote:
> As future work ;-), it would be neat if tab and S-tab would do
> folding/unfolding of build phases as in Magit and Org.
Good idea! I'll look at it.
I have pushed this patchset, thanks for reviewing it. Also I have
pushed an "uninteresting" comm
I asked this before. Would it be possible that hydra exports JSON (or
something) so we can get the package status without having to parse
HTML? So the output of
http://hydra.gnu.org/job/gnu/master/ruby-2.2.3.x86_64-linux
would be JSON with
http://hydra.gnu.org/job/gnu/master/ruby-2.2.3.x86_
* gnu/packages/ruby.scm (ruby-libxml): New variable.
---
gnu/packages/ruby.scm | 26 ++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index ee0acc8..1ca5f96 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -465
On Tue, Sep 15, 2015 at 08:58:28AM -0400, Thompson, David wrote:
> > +(home-page "http://bioruby.org/";)
> > +;; Code is released under Ruby license, except for setup
> > +;; (LGPLv2.1+), scripts in samples (GPL2 and GPL2+)
> > +(license (list license:ruby license:lgpl2.1+ license:g
* gnu/packages/ruby.scm (ruby-libxml): New variable.
---
gnu/packages/ruby.scm | 26 ++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index ee0acc8..1ca5f96 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -465
* gnu/packages/ruby.scm (ruby-gherkin3): New variable.
---
gnu/packages/ruby.scm | 25 +
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index ee0acc8..4756cd4 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -11
Hi Vicente,
> Actually, nearly every synopsis and description in these patches are
> taken verbatim from CRAN.
That’s what I thought. When I prepared my initial patches for R modules
to test the CRAN importer I found that I needed to edit both synopsis
and description for every package. The qua
On Tue, Sep 15, 2015 at 9:19 AM, Pjotr Prins wrote:
> On Tue, Sep 15, 2015 at 08:58:28AM -0400, Thompson, David wrote:
>> > +(native-inputs `(("ruby-libxml" ,ruby-libxml)))
>>
>> This should be a propagated input.
>
> oops. I can be such a noob.
No worries. :)
>> > +(inputs
>> > + `(
On Tue, Sep 15, 2015 at 10:48 AM, wrote:
> * gnu/packages/ruby.scm (ruby-gherkin3): New variable.
Looks good to me. Just minor comments below.
> ---
> gnu/packages/ruby.scm | 25 +
> 1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/ruby.scm b/gnu/packages
Hi,
Glad to hear the patches helped!
I've been fixing most of the issues (sentences with double spaces,
long lines) in all the patches. If you don't mind the extra time, I'll
attach the corrected patches in the next hours.
2015-09-15 11:42 GMT-03:00 Ricardo Wurmus :
> Hi Vicente,
>
>> Actually,
>From f8493e0e3e4520bb4de4fd20e93d325444332dc3 Mon Sep 17 00:00:00 2001
Date: Tue, 15 Sep 2015 14:21:17 +
Subject: [PATCH] gnu: Add ruby-gherkin3
To: guix-devel@gnu.org
From: pjotr.publi...@thebird.nl
* gnu/packages/ruby.scm (ruby-gherkin3): New variable.
---
gnu/packages/ruby.scm | 25 ++
* guix/script/lint.scm (check-description-style): Check for invalid
Texinfo markup.
* tests/lint.scm: Test it.
---
guix/scripts/lint.scm | 8
tests/lint.scm| 7 +++
2 files changed, 15 insertions(+)
diff --git a/guix/scripts/lint.scm b/guix/scripts/lint.scm
index ab7d7c6..
??? skribis:
> commit eb6afbcde784a72a96f3c5a70d657630d421b02a
> Author: 宋文武
> Date: Tue Sep 15 20:19:39 2015 +0800
>
> gnu: harfbuzz: Add "bin" output.
>
> * gnu/packages/gtk.scm (harfbuzz)[outputs]: New field.
> [arguments]<#:configure-flags>: Pass '--bindir'.
[...]
> --
Cyril Roelandt writes:
> * gnu/packages/openstack.scm (python-oslo.serialization,
> python2-oslo.serialization): New variables.
> ---
> gnu/packages/openstack.scm | 39 +++
> 1 file changed, 39 insertions(+)
>
> diff --git a/gnu/packages/openstack.scm b/gnu/
Cyril Roelandt writes:
> * gnu/packages/openstack.scm (python-oslo.context,
> python2-oslo.context): New variables.
> ---
> gnu/packages/openstack.scm | 31 +++
> 1 file changed, 31 insertions(+)
>
> diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.s
Cyril Roelandt writes:
> * gnu/packages/openstack.scm (python-requests-mock,
> python2-requests-mock): New variables.
> ---
> gnu/packages/openstack.scm | 31 +++
> 1 file changed, 31 insertions(+)
>
> diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack
Mathieu Lirzin skribis:
> * guix/script/lint.scm (check-description-style): Check for invalid
> Texinfo markup.
> * tests/lint.scm: Test it.
LGTM, thanks!
Ludo’.
Cyril Roelandt writes:
> * gnu/packages/python.scm (python-webob, python2-webob): New variables.
> ---
> gnu/packages/python.scm | 27 +++
> 1 file changed, 27 insertions(+)
>
> diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
> index c58d7f3..919573f 100644
Hello,
On Tue, Sep 15, 2015 at 06:54:51PM +0200, Mathieu Lirzin wrote:
>(sha256
> (base32
> "..."))
like someone else previously on this list I was also puzzled by the discussion
on formatting style (meaning, I did not understand what the indentation to
apply or to avoid is), so I wo
Updated patch attached.
2015-09-13 19:20 GMT-03:00 Vicente Vera :
> Hi Ricardo,
>
> CRAN importer? Hmm, just made a very useful discovery! I feel ashamed now.
>
> Attached goes the 1st patch with the modified copyright header and the
> fixed typo (actually, it came with the package description in
Andreas Enge writes:
> Hello,
>
> On Tue, Sep 15, 2015 at 06:54:51PM +0200, Mathieu Lirzin wrote:
>>(sha256
>> (base32
>> "..."))
>
> like someone else previously on this list I was also puzzled by the discussion
> on formatting style (meaning, I did not understand what the indentati
Updated patch attached.
2015-09-15 12:31 GMT-03:00 Vicente Vera :
> Hi,
>
> Glad to hear the patches helped!
>
> I've been fixing most of the issues (sentences with double spaces,
> long lines) in all the patches. If you don't mind the extra time, I'll
> attach the corrected patches in the next ho
Updated patch attached.
2015-09-14 16:35 GMT-03:00 Vicente Vera :
> New patch attached.
>
> 2015-09-14 7:46 GMT-03:00 Ricardo Wurmus :
>>
>> Vicente Vera writes:
>>
>>> * gnu/packages/statistics.scm (r-dbi): New variable.
>>
>> [...]
>>
>>> +(synopsis "R Database Interface")
>>
>> Please use
Updated patch attached.
2015-09-14 16:43 GMT-03:00 Vicente Vera :
> Hello,
>
> I don't know if the boost package in the distribution could be used to
> comply with the requirements. IMO it is safer to incorporate r-bh as
> it is needed by dplyr.
>
> New patch with corrections attached.
>
> 2015-09
Hi,
if you want to try the package in emacs, you must first unload
'geiser' as there is some incompatibility between the latter and
'xscheme' (from MIT-Scheme). The problem is fixed upstream (geiser).
Regards,
Fede
From 1aacd03326def7b52b8166a80cc18c8e8226aa62 Mon Sep 17 00:00:00 2001
From: Feder
Updated patch attached.
2015-09-14 16:47 GMT-03:00 Vicente Vera :
> Hi,
>
> Sure, once the upgraded package is available at CRAN the corresponding
> changes will be added. Thank you for the heads up.
>
> New patch attached.
>
> 2015-09-14 7:57 GMT-03:00 Ricardo Wurmus :
>>
>>> * gnu/packages/stati
Updated patch attached.
2015-09-13 13:47 GMT-03:00 Vicente Vera :
>
From e34df1d5c9e894d10caec9f05421a7a61907c600 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:16:47 -0300
Subject: [PATCH 06/19] gnu: Add r-formatr.
* gnu/packages/statistics.scm (r-formatr): New vari
Updated patch attached.
2015-09-13 13:49 GMT-03:00 Vicente Vera :
>
From d77ac349efa78e0efe098382f4e089d7dcd0fe43 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:18:25 -0300
Subject: [PATCH 08/19] gnu: Add r-mime.
* gnu/packages/statistics.scm (r-mime): New variable.
Updated patch attached.
2015-09-13 13:48 GMT-03:00 Vicente Vera :
>
From 3ca3843cd2fb34d254cd5930b70283136e0f91ea Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:17:50 -0300
Subject: [PATCH 07/19] gnu: Add r-highr.
* gnu/packages/statistics.scm (r-highr): New variable
Updated patch attached.
2015-09-14 16:59 GMT-03:00 Vicente Vera :
> Hello Ricardo,
>
> Both the code and the comment related to the check phase were changed.
> Indeed, the comment was pretty much unreadable. Hope the new one is
> better.
>
> New patch attached.
>
> 2015-09-14 8:10 GMT-03:00 Ricard
Updated patch attached.
2015-09-13 13:51 GMT-03:00 Vicente Vera :
>
From 05faef5307e8b6c8e7e7aed0ec79a6b8bd6d18bf Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:19:33 -0300
Subject: [PATCH 10/19] gnu: Add r-yaml.
* gnu/packages/statistics.scm (r-yaml): New variable.
Updated patch attached.
2015-09-14 17:06 GMT-03:00 Vicente Vera :
> Hello,
>
> I'm not sure if it's correct, but I changed the license from gpl3+ to
> gpl2+ to keep it consistent with the r-markdown package
> (https://www.gnu.org/licenses/gpl-faq.html#v2v3Compatibility). Thanks
> for figuring that
Updated patch attached.
2015-09-13 13:52 GMT-03:00 Vicente Vera :
>
From dd1275eb089b0fd5e95563b40864098a4e05cba8 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:20:47 -0300
Subject: [PATCH 12/19] gnu: Add r-microbenchmark.
* gnu/packages/statistics.scm (r-microbenchm
Updated patch attached.
2015-09-13 13:52 GMT-03:00 Vicente Vera :
>
From e7acdd3768577c18b2f2141f509c0eb7f244cdf3 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:21:19 -0300
Subject: [PATCH 13/19] gnu: Add r-codetools.
* gnu/packages/statistics.scm (r-codetools): New
Updated patch attached.
2015-09-13 13:53 GMT-03:00 Vicente Vera :
>
From e4567ed67528258ceff06d43fdbbb0248c6acc2d Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:22:35 -0300
Subject: [PATCH 14/19] gnu: Add r-pryr.
* gnu/packages/statistics.scm (r-pryr): New variable.
Updated patch attached.
2015-09-13 13:53 GMT-03:00 Vicente Vera :
>
From 6e1c3b2598da36af3a1c34af1b9a48df865d6711 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:23:07 -0300
Subject: [PATCH 15/19] gnu: Add r-memoise.
* gnu/packages/statistics.scm (r-memoise): New vari
Updated patch attached.
2015-09-13 13:54 GMT-03:00 Vicente Vera :
>
From de5cfb321fddcae013ca3ddd38f51385e54b71d7 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:23:46 -0300
Subject: [PATCH 16/19] gnu: Add r-crayon.
* gnu/packages/statistics.scm (r-crayon): New variab
Updated patch attached.
2015-09-13 13:55 GMT-03:00 Vicente Vera :
>
From 3be96f6cf9758dc701647c19f2e6f16a8a23f98f Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:24:17 -0300
Subject: [PATCH 17/19] gnu: Add r-testthat.
* gnu/packages/statistics.scm (r-testthat): New va
Updated patch attached.
2015-09-13 13:56 GMT-03:00 Vicente Vera :
>
From 9ca87e430f334c453199339001f93e14f23a28bc Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:24:46 -0300
Subject: [PATCH 18/19] gnu: Add r-r6.
* gnu/packages/statistics.scm (r-r6): New variable.
---
Updated patch attached.
2015-09-13 13:56 GMT-03:00 Vicente Vera :
>
From cb3a4a5ada258b8ae7ff1850f0b69ff14cae9766 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:25:14 -0300
Subject: [PATCH 19/19] gnu: Add r-dplyr.
* gnu/packages/statistics.scm (r-dplyr): New variable
taylanbayi...@gmail.com (Taylan Ulrich "Bayırlı/Kammer") writes:
> Emacs will use 2 spaces when the symbol (e.g. sha256 in this case) has
> its 'scheme-indent-function' property set, and 1 space otherwise. So
> you get
>
> (let (...)
> foobar) ;two spaces because 'let has its 'scheme-i
On Tue, Sep 15, 2015 at 10:48 AM, wrote:
> * gnu/packages/ruby.scm (ruby-gherkin3): New variable.
Fixed up and pushed. Thanks!
- Dave
I was surprised when I didn't found ‘cl-any’ function. Now it's clear —
its name is ‘cl-some’. Oops :-)
>From 0ca666e091735c82a5f197b43bd2317c2b2e4b84 Mon Sep 17 00:00:00 2001
From: Alex Kost
Date: Tue, 15 Sep 2015 21:36:23 +0300
Subject: [PATCH] emacs: Replace 'guix-any' with 'cl-some'.
* ema
Ludovic Courtès (2015-09-14 15:02 +0300) wrote:
> As future work ;-), it would be neat if tab and S-tab would do
> folding/unfolding of build phases as in Magit and Org.
Here it is. Thanks for the idea!
>From f4fad1ab1c78a84ac3b2fdedba4850c5e589ce0d Mon Sep 17 00:00:00 2001
From: Alex Kost
Dat
Pjotr Prins skribis:
> I asked this before. Would it be possible that hydra exports JSON (or
> something) so we can get the package status without having to parse
> HTML? So the output of
>
> http://hydra.gnu.org/job/gnu/master/ruby-2.2.3.x86_64-linux
>
> would be JSON with
>
> http://hydra.
> Updated patch attached.
I applied two minor changes (pulling the text for home page and the
synopsis on the same line) and pushed to master.
Thank you!
~~ Ricardo
宋文武 writes:
>>> We can set 'GTK_EXE_PREFIX' to the '~/.guix-profile', and generate the
>>> 'immodules.cache' files in a profile hook. It will work for both gtk2
>>> and gtk3 applications.
>> Does this mean that GTK needs to be installed in the user’s profile for
>> this to work? I thought ‘GT
Hello!
I wanted to add a note somewhere in the manual about Texinfo markup and
ended up writing a section on synopses and descriptions (see below.)
Comments welcome!
Ludo’.
PS: Bioinfo people: apologies in advance, I just took a random example
that I hoped would illustrate the point. :-)
l...@gnu.org (Ludovic Courtès) writes:
> I wanted to add a note somewhere in the manual about Texinfo markup and
> ended up writing a section on synopses and descriptions (see below.)
Thanks for taking the time to do it!
> 7.6.4 Synopses and Descriptions
> ---
[...]
On 09/15/2015 06:43 PM, Mathieu Lirzin wrote:
> Cyril Roelandt writes:
>> > +
>> > +(define-public python-webob
>> > + (package
>> > +(name "python-WebOb")
> ^^^
> Does these uppercase letters are required?
>
Well, that is a good question. I think we currently use lower
2015-09-16 0:23 GMT+08:00 Ludovic Courtès :
> ??? skribis:
>
>> commit eb6afbcde784a72a96f3c5a70d657630d421b02a
>> Author: 宋文武
>> Date: Tue Sep 15 20:19:39 2015 +0800
>>
>> gnu: harfbuzz: Add "bin" output.
>>
>> * gnu/packages/gtk.scm (harfbuzz)[outputs]: New field.
>> [arguments]
Federico Beffa writes:
> if you want to try the package in emacs, you must first unload
> 'geiser' as there is some incompatibility between the latter and
> 'xscheme' (from MIT-Scheme). The problem is fixed upstream (geiser).
It looks like this package downloads a pre-compiled binary bundle
cont
* gnu/packages/ruby.scm (ruby-cucumber-core): New variable.
---
gnu/packages/ruby.scm | 28
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 7dc46b6..752b825 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.sc
* gnu/packages/ruby.scm (ruby-docile): New variable.
---
gnu/packages/ruby.scm | 23 +++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 7dc46b6..539b00b 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -1125,6
* gnu/packages/ruby.scm (ruby-simplecov): New variable.
---
gnu/packages/ruby.scm | 28
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 539b00b..2f7f89c 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@
On Tue, Sep 15, 2015 at 09:05:46PM +0200, Ludovic Courtès wrote:
> It turns out that Hydra has a bunch of things under
> lib/Hydra/Controller/API.pm¹. For example:
>
> http://hydra.gnu.org/api/latestbuilds?nr=10
>
> { "project":"gnu",
> "timestamp":1442315120,
> "nixname":"gcr-3.16.0
Thanks for the feedback! Here's an updated patch. Let me know if I missed
anything.
I agree that we can drop hours from the elapsed time (or adaptively add
them if needed). I will send a fix for that in a subsequent patch.
On Tue, Sep 15, 2015 at 1:22 AM, Ludovic Courtès wrote:
> Steve Sprang
* gnu/packages/ruby.scm (ruby-log4r): New variable.
---
gnu/packages/ruby.scm | 24
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 7dc46b6..e61332f 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -421,6
* gnu/packages/ruby.scm (ruby-bio-logger): New variable.
---
gnu/packages/ruby.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index e61332f..0cdc5e3 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -445,
On Wed, Sep 16, 2015 at 3:59 AM, Mark H Weaver wrote:
> Federico Beffa writes:
>
>> if you want to try the package in emacs, you must first unload
>> 'geiser' as there is some incompatibility between the latter and
>> 'xscheme' (from MIT-Scheme). The problem is fixed upstream (geiser).
>
> It loo
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
---
gnu/packages/bioinformatics.scm | 25 +
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1f34211..b9e1158 100644
--- a/gnu/package
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