Ben Woodcroft (2015-07-05 07:52 +0300) wrote:
> On 27/06/15 22:33, Ben Woodcroft wrote:
>> To me this is problematic in two ways:
>> 1. It works on more than just genomes
>> 2. There is some contention in the field about the use of
>> "prokaryote", since this refers to a paraphyletic group - us hu
Ben Woodcroft writes:
> From d220bdeac89660108de96a96107daf89182310e0 Mon Sep 17 00:00:00 2001
> From: Ben Woodcroft
> Date: Wed, 24 Jun 2015 14:32:26 +1000
> Subject: [PATCH] gnu: Add yaggo.
>
> * gnu/packages/ruby.scm (yaggo): New variable.
> ---
> gnu/packages/ruby.scm | 32 +
Alex Kost writes:
> Ricardo is a Master of bioinformatics
Haha! :)
Mark already pushed it. I simply forgot about this patch, my apologies!
~~ Ricardo
l...@gnu.org (Ludovic Courtès) writes:
> "Claes Wallin (韋嘉誠)" skribis:
>
>> So *that's* what the mysterious (title 'label) means!
>
> It’s not that mysterious:
IMO, 'title' is a very confusing name for that field, because its value
is not the title of anything, but rather determines how the valu
Attached is a patch for the cmake-build-system. I have encountered a
couple of applications that failed the validate-runpath phase because
the RUNPATH was not set properly.
I found that setting BUILD_WITH_INSTALL_RPATH=TRUE helped when the
INSTALL_RPATH was also set to contain all inputs, like th
Hi David, Ricardo,
Ricardo Wurmus skribis:
> So, I applied the patch, built rhythmbox, and installed it into a
> separate profile. It starts up fine and begins importing files from
> ~/Music but I get a *lot* of import errors:
>
>“Couldn’t create ‘uridecodebin’ element”
>
> I see this for a
Cyril Roelandt skribis:
> * gnu/packages/python.scm (python-testtools): move python-mimeparse from
> inputs
> to propagated-inputs.
Please add “python-testtools:” in the subject line. Otherwise LGTM.
Ludo’.
Mark H Weaver skribis:
> Eric Bavier writes:
>> I ended up pushing with the "dealii" name.
>
> In the build logs, I see many occurrences of the following warning:
>
> Assembler messages:
> Warning: cannot compress debug sections (zlib not installed)
>
> presumably because of the -Wa,--compre
Ricardo Wurmus skribis:
> From 2d11dfa79d388e409965cda8f05d77b3eafcee86 Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus
> Date: Sat, 4 Jul 2015 11:11:19 +0200
> Subject: [PATCH 1/2] gnu: powertabeditor: Enable tests.
>
> * gnu/packages/music.scm (powertabeditor)[arguments]: Run "pte_tests" in
>
On 05/07/15 17:33, Mark H Weaver wrote:
Normally I use more whitespace, but in this case I think it's perfectly
readable. What do you think?
Sure.
The tab issues were caused by my using the scheme mode of emacs rather
than the guile one, and shouldn't happen any more. Apparently also when
yo
>> So, I applied the patch, built rhythmbox, and installed it into a
>> separate profile. It starts up fine and begins importing files from
>> ~/Music but I get a *lot* of import errors:
>>
>>“Couldn’t create ‘uridecodebin’ element”
>>
>> I see this for a great many ogg and mp3 files in my ~/
On Jul 5, 2015 10:16 AM, "Mark H Weaver" wrote:
> l...@gnu.org (Ludovic Courtès) writes:
> > "Claes Wallin (韋嘉誠)" skribis:
> >
> >> So *that's* what the mysterious (title 'label) means!
> >
> > It’s not that mysterious:
>
> IMO, 'title' is a very confusing name for that field, because its value
>
On Fri, Jul 03, 2015 at 09:57:15PM +0200, Andreas Enge wrote:
> The attached patch does the first half of the change. Is it okay to push it?
I did, as there was no complaint; the next part (move openssl.scm into
tls.scm) will follow soon.
Andreas
Hi Ludo and Ricardo,
The 'uridecodebin' error is a result of GST_PLUGIN_SYSTEM_PATH not being
set. However, the recent patch to gstreamer adds that to its native search
paths, so that error should be resolved now on an updated system. I had a
line defining GST_PLUGIN_SYSTEM_PATH in my .bashrc, but
On 2015-07-05 17:28, David Hashe wrote:
Hi Ludo and Ricardo,
The 'uridecodebin' error is a result of GST_PLUGIN_SYSTEM_PATH not
being set. However, the recent patch to gstreamer adds that to its
native search paths, so that error should be resolved now on an
updated system. I had a line defining
>From 1f5f4de3da2f8158884116746ed00435a317b6c6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus
Date: Sun, 5 Jul 2015 19:58:38 +0200
Subject: [PATCH] gnu: Add emacs-pdf-tools.
* gnu/packages/emacs.scm (emacs-pdf-tools): New variable.
---
gnu/packages/emacs.scm | 61 +
The attached patch should fix the build of setbfree on MIPS64. The
default value for OPTIMIZATIONS contains flags for x86 systems.
I have not tested this as I don’t have access to a MIPS64 system.
>From 87a5264e54d93cfd84b3c886e2d6ee5fbe69cce7 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus
Date:
On 2015-07-05 19:45, Amirouche Boubekki wrote:
On 2015-07-05 17:28, David Hashe wrote:
Hi Ludo and Ricardo,
The 'uridecodebin' error is a result of GST_PLUGIN_SYSTEM_PATH not
being set. However, the recent patch to gstreamer adds that to its
native search paths, so that error should be resolved
On Sun, Jul 5, 2015 at 2:24 PM, Amirouche Boubekki
wrote:
> On 2015-07-05 19:45, Amirouche Boubekki wrote:
>
>> On 2015-07-05 17:28, David Hashe wrote:
>>
>>> Hi Ludo and Ricardo,
>>>
>>> The 'uridecodebin' error is a result of GST_PLUGIN_SYSTEM_PATH not
>>> being set. However, the recent patch t
Mathieu Lirzin skribis:
> Alex Kost writes:
>
>> Not related: I wonder is there a reason to ignore (in .gitignore) the
>> whole "build-aux" directory? IIUC this led to commit 8bc35f8, right?
>
> As you have pointed out and to be more explicit about the context, the
> commit 8bc35f8 was introduc
Alex Kost skribis:
> From 3f8c6b024b3df310f2076ff897af8169d45005da Mon Sep 17 00:00:00 2001
> From: Alex Kost
> Date: Sat, 4 Jul 2015 12:27:26 +0300
> Subject: [PATCH] build: Generate 'AUTHORS'.
>
> * build-aux/generate-authors.scm: New file.
> * Makefile.am (gen-AUTHORS): New target.
> (dist-
Ricardo Wurmus writes:
> The attached patch should fix the build of setbfree on MIPS64. The
> default value for OPTIMIZATIONS contains flags for x86 systems.
[...]
> diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
> index 9e7e012..8f49f04 100644
> --- a/gnu/packages/music.scm
> +++
Mark H Weaver skribis:
> l...@gnu.org (Ludovic Courtès) writes:
>
>> "Claes Wallin (韋嘉誠)" skribis:
>>
>>> So *that's* what the mysterious (title 'label) means!
>>
>> It’s not that mysterious:
>
> IMO, 'title' is a very confusing name for that field, because its value
> is not the title of anythi
Ricardo Wurmus skribis:
> Attached is a patch for the cmake-build-system. I have encountered a
> couple of applications that failed the validate-runpath phase because
> the RUNPATH was not set properly.
>
> I found that setting BUILD_WITH_INSTALL_RPATH=TRUE helped when the
> INSTALL_RPATH was al
I like Ludovic's idea is going in the right direction.
On Sun, Jul 5, 2015 at 6:33 PM, Ludovic Courtès wrote:
> Mark H Weaver skribis:
>
>> l...@gnu.org (Ludovic Courtès) writes:
>>
>>> "Claes Wallin (韋嘉誠)" skribis:
>>>
So *that's* what the mysterious (title 'label) means!
>>>
>>> It’s not
Ludovic Courtès writes:
>> I found that setting BUILD_WITH_INSTALL_RPATH=TRUE helped when the
>> INSTALL_RPATH was also set to contain all inputs, like this:
>>
>> (string-append "-DCMAKE_INSTALL_RPATH="
>> (string-join (map (match-lambda
>>
Attached is a new patch, leaving the optimizations unaltered only on
i686 and x86_64.
>From 50536b6e40eed40822b65aba2c296809e5bfbc1e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus
Date: Sun, 5 Jul 2015 20:40:56 +0200
Subject: [PATCH] gnu: setbfree: Disable unsupported optimizations on non-x86.
*
Hi,
I was having trouble using substitutes, so I decided to investigate it.
I found out that when retrieving the batch of .narinfo files from the
server, my connection was always being closed after the first response.
Therefore, I would always be reconnecting to the server with every
request in th
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