[PATCH]: Add python-sphinx-rtd-theme.

2015-02-06 Thread Ricardo Wurmus
Hi Guix, attached is a patch to add a Python package for the ReadTheDocs.org Sphinx theme. ~~ Ricardo >From c8ba1aa7680f5d75c34177442c39507a49e8b2ae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 6 Feb 2015 11:34:00 +0100 Subject: [PATCH] gnu: Add Sphinx RTD theme. * gnu/packages/pyt

[PATCH]: gnu: Add seqan.

2015-02-06 Thread Ricardo Wurmus
Attached is a patch that adds the seqan library to the bioinformatics module. Seqan is a header library, so it doesn't need to be built; it's included in the build procedure of tools using it. This package does not include the application bundle, which is really just a number of applications by t

[PATCH]: gnu: Add flexbar.

2015-02-06 Thread Ricardo Wurmus
Hi Guix, attached is a patch to add another common bioinformatics tool to the bioinformatics module: flexbar. ~~ Ricardo >From fc082d741f31fb6260c8fd92332d63ed40e592e5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 6 Feb 2015 15:42:02 +0100 Subject: [PATCH] gnu: Add flexbar. * gnu/pa

Re: [PATCH]: Add Ant.

2015-02-06 Thread Ricardo Wurmus
>> * to use Ant without problems ANT_HOME and JAVA_HOME really should be >> set appropriately (ANT_HOME to $out of the ant-minimal package, >> JAVA_HOME to $out of icedtea6). Should I suggest these two paths as >> search paths by adding something like this to ant-minimal (for >> ANT_HOME)

Noteworthy ‘guix package’ and ‘guix pull’ bug fixes

2015-02-06 Thread Ludovic Courtès
Let me draw your attention to these two noteworthy bug fixes since everyone is likely to have been hit by those two bugs: commit c9323a4c69d48bc9af3825674e43a3febbb42091 Author: Ludovic Courtès Date: Fri Feb 6 17:52:07 2015 +0100 guix package: Make custom profiles actual indirect roots.

[PATCH] gnu: Add tidy.

2015-02-06 Thread David Thompson
Thanks to Mark for adding the cvs-fetch download method! >From 0e93fe70c5c512a8d2badb4c710d4ebe772829b9 Mon Sep 17 00:00:00 2001 From: David Thompson Date: Fri, 6 Feb 2015 21:14:11 -0500 Subject: [PATCH] gnu: Add tidy. * gnu/packages/web.scm (tidy): New variable. --- gnu/packages/web.scm | 36 +