2018-05-13 7:07 GMT+02:00 Ricardo Wurmus :
>
> Catonano writes:
>
> > Ricardo, I don't understand the problem you're raising here (I didn't
> read
> > the article yet, though)
> >
> > Would you mind to elaborate on that ?
> >
> > Why would you want to record the environment ?
>
> I want to record
Catonano writes:
> Ricardo, I don't understand the problem you're raising here (I didn't read
> the article yet, though)
>
> Would you mind to elaborate on that ?
>
> Why would you want to record the environment ?
I want to record the detected build environment so that I can restore it
at execu
2018-05-11 10:19 GMT+02:00 Ricardo Wurmus :
>
> Ludovic Courtès writes:
>
> > Perhaps we could add to Autoconf-Archive (if it doesn’t have such things
> > already) macros to deal with the R and Python stuff you had to deal
> > with? And then publish a simple template that people could use as a
>
Ludovic Courtès writes:
> Perhaps we could add to Autoconf-Archive (if it doesn’t have such things
> already) macros to deal with the R and Python stuff you had to deal
> with? And then publish a simple template that people could use as a
> starting point.
I submitted my macros for R packages
Hello!
Ricardo Wurmus skribis:
> Ludovic Courtès writes:
[...]
>> Given the intended audience, I wonder how we could provide a simpler
>> path to achieve the same goal. It could be a set of Autoconf macros
>> leading to high-level ‘configure.ac’ files without any line of shell
>> code, or it
Hello Ricardo & all!
Ricardo Wurmus skribis:
> I’m happy to announce that the group I’m working with has released a
> preprint of a paper on reproducibility with the title:
>
> Reproducible genomics analysis pipelines with GNU Guix
> https://www.biorxiv.org/content/early/2018/04/11/29865
Wow very great, thanks for sharing.
On Wed, Apr 11, 2018 at 11:17 PM Roel Janssen wrote:
>
> Ricardo Wurmus writes:
>
> > Hey all,
> >
> > I’m happy to announce that the group I’m working with has released a
> > preprint of a paper on reproducibility with the title:
> >
> > Reproducible gen
Ricardo Wurmus writes:
> Hey all,
>
> I’m happy to announce that the group I’m working with has released a
> preprint of a paper on reproducibility with the title:
>
> Reproducible genomics analysis pipelines with GNU Guix
> https://www.biorxiv.org/content/early/2018/04/11/298653
>
> We
hi again,
and extra kudos and thanks for releasing this under a free licence! \o/
--
cheers,
Holger
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On Wed, Apr 11, 2018 at 08:40:47PM +0200, Ricardo Wurmus wrote:
> > just one thing/question: in the keywords you have "reproducible
> Heh, it used to be “reproducible builds”, but the term was deemed too
> abstract for the audience of biologists, so it was decided to change it
> to “reproducible so
Hi Ricardo,
On Wed, Apr 11, 2018 at 02:18:38PM +0200, Ricardo Wurmus wrote:
> I’m happy to announce that the group I’m working with has released a
> preprint of a paper on reproducibility with the title:
>
> Reproducible genomics analysis pipelines with GNU Guix
> https://www.biorxiv.org/
Hi Holger,
thanks for your comments!
> just one thing/question: in the keywords you have "reproducible
> software" but not "reproducible builds", which is kind of our "marketing
> term". Do you think you could squeeze that in?
Heh, it used to be “reproducible builds”, but the term was deemed to
Hey all,
I’m happy to announce that the group I’m working with has released a
preprint of a paper on reproducibility with the title:
Reproducible genomics analysis pipelines with GNU Guix
https://www.biorxiv.org/content/early/2018/04/11/298653
We built a collection of bioinformatics pipe
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