Hi Kyle,
On Tue, 04 Apr 2023 at 14:32, Kyle wrote:
> The CRAN importer, for example, cannot yet detect non-R
> dependencies. So, the profile author has to figure those out for
> themselves. It's still very useful despite not being perfect.
Yeah, improving the importers is very helpf
>I do not know what you have in mind with “working satisfiable
>configurations” or with “a variant of the solver”. To my knowledge,
>this implies some SAT solver. Well, before going this direction, I
>would suggest to read some output of the Mancoosi project [8].
>Especially this part [9]. F
Hi,
On Mon, 03 Apr 2023 at 20:41, Spencer Skylar Chan
wrote:
>> I would expect most software versions to not be in Guix. Simon had
>> mentioned that this is mostly what the guix-past repository is
>> for. However, some packages might be buried on some branch or some
>> commit in some Guix relat
Hi Spencer,
Here is the documentation for the git commit-graph cache file. The authors also
made their own blog posts about it as well with a bit more explanation.
=> https://git-scm.com/docs/commit-graph
=>
https://devblogs.microsoft.com/devops/updates-to-the-git-commit-graph-feature/
Maybe i
Hi Kyle,
On 3/31/23 11:15, Kyle wrote:
I would expect most software versions to not be in Guix. Simon had mentioned
that this is mostly what the guix-past repository is for. However, some
packages might be buried on some branch or some commit in some Guix related git
repository. It may be hel
I would expect most software versions to not be in Guix. Simon had mentioned
that this is mostly what the guix-past repository is for. However, some
packages might be buried on some branch or some commit in some Guix related git
repository. It may be helpful to facilitate their discovery and ext
As a statistician who always wants to get the most information for the least
effort, I am particularly interested in being able to reprioritize workflow
jobs interactively within the equivalent portions of the topological sort. I
thought perhaps this would be possible with GWL if it could talk t
Hi Ricardo,
On 3/23/23 03:58, Ricardo Wurmus wrote:
Hi,
Spencer Skylar Chan writes:
One approach could be to add CWL import/export capabilities to
GWL. Then Snakemake/GWL conversion would be a 2 step process, using
CWL as an intermediate step:
1. Snakemake -> CWL
2. CWL -> GWL
This seems
Hi Kyle,
On 3/24/23 14:59, Kyle wrote:
I am a bit worried about your proposed project is too focused on
replacing python with guile. I think the project would benefit more from
making python users more comfortable productively using Guix tools in
concert with the tools they are already comfort
Hi,
Spencer Skylar Chan writes:
> One approach could be to add CWL import/export capabilities to
> GWL. Then Snakemake/GWL conversion would be a 2 step process, using
> CWL as an intermediate step:
>
> 1. Snakemake -> CWL
> 2. CWL -> GWL
This seems doable.
> However, CWL is not as expressive a
Dear Spencer,
I am a bit worried about your proposed project is too focused on replacing
python with guile. I think the project would benefit more from making python
users more comfortable productively using Guix tools in concert with the tools
they are already comfortable with.
I'm wondering
Hi Ricardo,
On 3/22/23 14:19, Ricardo Wurmus wrote:
- Translating Snakemake to Guix Workflow Language (GWL)
Ricardo, maybe you would have some suggestions. :-)
Oh, this looks interesting. Could you please elaborate on the idea?
My idea is to take as input a Snakemake workflow file and ev
>> - Translating Snakemake to Guix Workflow Language (GWL)
>
> Ricardo, maybe you would have some suggestions. :-)
Oh, this looks interesting. Could you please elaborate on the idea?
--
Ricardo
Hi Simon,
On 3/11/23 08:32, Simon Tournier wrote:
- Creating Guix manifests from `conda env export`
It is not clear for me what would be the path to tackle this.
Here are the prior mails about this:
https://lists.gnu.org/archive/html/guix-devel/2023-03/msg00020.html
https://lists.gnu.org/
Hi,
On Sat, 11 Mar 2023 at 14:32, Simon Tournier wrote:
> and probably more in the bug
> tracker.
For instance, you might be interested by:
https://issues.guix.gnu.org/issue/43442#9
https://issues.guix.gnu.org/issue/43442#11
as discussed in the rece
Hi Skylar,
CC: Ricardo and Kyle
On Mon, 06 Mar 2023 at 20:31, Spencer Skylar Chan
wrote:
> I've been running the Guix package manager with Arch Linux on my work
> computer for 1 year and Guix system on my non-work computer for 1/2
> year. I've contributed some package upgrades to Guix with t
Hello Guix,
I'm a computer science major at University of Maryland and I'm
interested in contributing to Guix through Google Summer of Code.
I've done bioinformatics research on RNA sequences using R, Python, and
Bash. I have some experience with Racket, Rust, C, and Java as well.
I've been
Hello Guix,
I'm a computer science major at University of Maryland and I'm
interested in contributing to Guix through Google Summer of Code.
I've done bioinformatics research on RNA sequences using R, Python, and
Bash. I have some experience with Racket, Rust, C, and Java as well.
I've been
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