Re: [PATCH 3/3] gnu: Add khmer.

2016-06-25 Thread Leo Famulari
On Sat, Jun 18, 2016 at 09:41:46AM +1000, Ben Woodcroft wrote: > It would be better if I knew a way of copying directory into another > directory, like an "install-directory". How about copy-recursively, from (guix build utils)?

Re: [PATCH 3/3] gnu: Add khmer.

2016-06-17 Thread Ben Woodcroft
On 17/06/16 17:23, Leo Famulari wrote: On Fri, Jun 17, 2016 at 11:23:21AM +1000, Ben Woodcroft wrote: +(build-system python-build-system) +(arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-paths This phase deletes bundled libraries a

Re: [PATCH 3/3] gnu: Add khmer.

2016-06-17 Thread Leo Famulari
On Fri, Jun 17, 2016 at 11:23:21AM +1000, Ben Woodcroft wrote: > +(build-system python-build-system) > +(arguments > + `(#:phases > + (modify-phases %standard-phases > + (add-after 'unpack 'set-paths This phase deletes bundled libraries and then copies one of the librarie

[PATCH 3/3] gnu: Add khmer.

2016-06-16 Thread Ben Woodcroft
* gnu/packages/bioinformatics.scm (khmer): New variable. * gnu/packages/patches/khmer-use-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. --- gnu/local.mk | 1 + gnu/packages/bioinformatics.scm| 92 ++