Hello,
Marius Bakke skribis:
> I'm not sure, we would have to do this with every package that uses
> the pysam cython interface. This particular issue is described in the
> manual:
>
> https://www.gnu.org/software/guix/manual/html_node/package-Reference.html
>
> The propagated-inputs section say
On 27/09/16 04:32, Marius Bakke wrote:
Ben Woodcroft writes:
On 24/09/16 13:15, Marius Bakke wrote:
Ben Woodcroft writes:
Htslib is propagated because it
is included by the installed samtools and bcftools headers; at least one
of pysams dependencies failed to build when it was a regular in
Ben Woodcroft writes:
> On 24/09/16 13:15, Marius Bakke wrote:
>> Ben Woodcroft writes:
>>
Htslib is propagated because it
is included by the installed samtools and bcftools headers; at least one
of pysams dependencies failed to build when it was a regular input.
>>> Ah, I see. Ca
On 24/09/16 13:15, Marius Bakke wrote:
Ben Woodcroft writes:
Htslib is propagated because it
is included by the installed samtools and bcftools headers; at least one
of pysams dependencies failed to build when it was a regular input.
Ah, I see. Can this be avoided with patchelf?
I don't th
Ben Woodcroft writes:
>> Htslib is propagated because it
>> is included by the installed samtools and bcftools headers; at least one
>> of pysams dependencies failed to build when it was a regular input.
> Ah, I see. Can this be avoided with patchelf?
I don't think so. The htslib headers need to
On 24/09/16 01:56, Marius Bakke wrote:
Ben Woodcroft writes:
Also, I notice that pysam bundles htslib, bcftools and samtools C code.
Hopefully it should be straightforward enough to remove htslib as there
are install instructions, I'm not sure about the other two. This
shouldn't block the pa
Marius Bakke writes:
> Ben Woodcroft writes:
>
>>>
Also, I notice that pysam bundles htslib, bcftools and samtools C code.
Hopefully it should be straightforward enough to remove htslib as there
are install instructions, I'm not sure about the other two. This
shouldn't block
Ben Woodcroft writes:
>>
>>> Also, I notice that pysam bundles htslib, bcftools and samtools C code.
>>> Hopefully it should be straightforward enough to remove htslib as there
>>> are install instructions, I'm not sure about the other two. This
>>> shouldn't block the patch here, but would you m
On 09/23/2016 01:15 AM, Marius Bakke wrote:
Ben Woodcroft writes:
Subject: [PATCH 1/3] gnu: python-pysam: Update to 0.9.1.4.
I'm not sure whether this is a product of the upgrade or not, but I
notice this in the build log. I think it is harmless though, WDYT?
starting phase `validate-runpa
Ben Woodcroft writes:
>> Subject: [PATCH 1/3] gnu: python-pysam: Update to 0.9.1.4.
> I'm not sure whether this is a product of the upgrade or not, but I
> notice this in the build log. I think it is harmless though, WDYT?
>
> starting phase `validate-runpath'
> validating RUNPATH of 10 binaries
On 22/09/16 07:14, Marius Bakke wrote:
[..]
Hi Ben,
Thanks for the review. Updated patches attached.
Hi,
Subject: [PATCH 1/3] gnu: python-pysam: Update to 0.9.1.4.
I'm not sure whether this is a product of the upgrade or not, but I
notice this in the build log. I think it is harmless though
t;
+"1i1djacqbr88y7w18b4aa78zxnsyr4sz7yqdq2spi7gs0y6pzvjn"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; tests are excluded in the manifest
--
2.10.0
>From 6a8ddd17d7f11e0687217c8649a452a1a56c596c Mon Sep 17 00:00:00 2001
From: Ma
Hi again,
On 20/09/16 16:34, Ben Woodcroft wrote:
Oops, forgot to cc the list.
On 20/09/16 16:02, Ben Woodcroft wrote:
Hi Marius,
Thanks for the patches.
On 17/09/16 20:10, Marius Bakke wrote:
[..]
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ ;; See https://
Oops, forgot to cc the list.
On 20/09/16 16:02, Ben Woodcroft wrote:
Hi Marius,
Thanks for the patches.
On 17/09/16 20:10, Marius Bakke wrote:
[..]
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ ;; See https://github.com/pabigot/pyxb/issues/26 ...
+ (
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
---
gnu/packages/xml.scm | 37 +
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 7befad5..793cd2f 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/pack
15 matches
Mail list logo
