Re: [PATCH] gnu: Update STAR to 2.5.0c.

2016-01-22 Thread Ricardo Wurmus
Ludovic Courtès writes: > Ricardo Wurmus skribis: > >> From e7090b086c71fb8f8a56b6c7cb078b94bc577d2c Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Tue, 19 Jan 2016 16:04:01 +0100 >> Subject: [PATCH 1/2] gnu: star: Use "modify-phases" syntax. >> >> * gnu/packages/bioinformatics.scm

Re: [PATCH] gnu: Update STAR to 2.5.0c.

2016-01-22 Thread Ricardo Wurmus
Ben Woodcroft writes: > I notice that 2.5.1a is now released - I guess you started working on > the patch before it was so. And now 2.5.1b has been released :) I updated the commit. Thanks for the hint. > STARlong is in the binaries that are distributed ie > https://github.com/alexdobin/ST

Re: [PATCH] gnu: Update STAR to 2.5.0c.

2016-01-22 Thread Ludovic Courtès
Ricardo Wurmus skribis: > From e7090b086c71fb8f8a56b6c7cb078b94bc577d2c Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Tue, 19 Jan 2016 16:04:01 +0100 > Subject: [PATCH 1/2] gnu: star: Use "modify-phases" syntax. > > * gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phase

Re: [PATCH] gnu: Update STAR to 2.5.0c.

2016-01-22 Thread Ben Woodcroft
Hi Ricardo, I notice that 2.5.1a is now released - I guess you started working on the patch before it was so. STARlong is in the binaries that are distributed ie https://github.com/alexdobin/STAR/tree/master/bin/Linux_x86_64 but this is not built by us since the default make target in source/

[PATCH] gnu: Update STAR to 2.5.0c.

2016-01-19 Thread Ricardo Wurmus
>From e7090b086c71fb8f8a56b6c7cb078b94bc577d2c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 19 Jan 2016 16:04:01 +0100 Subject: [PATCH 1/2] gnu: star: Use "modify-phases" syntax. * gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases" syntax. --- gnu/packages/bioin