Re: [PATCH] gnu: Add mash.

2016-09-10 Thread Leo Famulari
On Thu, Sep 08, 2016 at 11:06:44PM +0100, Marius Bakke wrote: > * gnu/packages/bioinformatics.scm (mash): New variable. Anyways, pushed as 84be3b9920120e7cc03095baca06d61b7f3fb741. If the package needs more changes, we will change it :)

Re: [PATCH] gnu: Add mash.

2016-09-10 Thread Leo Famulari
On Thu, Sep 08, 2016 at 11:06:44PM +0100, Marius Bakke wrote: > Leo Famulari writes: > > > On Thu, Sep 01, 2016 at 11:00:39AM +0100, Marius Bakke wrote: > >> I had these in inputs initially and was surprised to see no references. > >> Both seems to be compiled into the final program[0]: when runn

Re: [PATCH] gnu: Add mash.

2016-09-08 Thread Marius Bakke
s >From 9e8102ed2d5bf9334e5311f2ac917aed2f451361 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Tue, 30 Aug 2016 18:49:21 +0100 Subject: [PATCH] gnu: Add mash. * gnu/packages/bioinformatics.scm (mash): New variable. --- gnu/packages/bioinformatics.scm | 57 +++

Re: [PATCH] gnu: Add mash.

2016-09-06 Thread Leo Famulari
On Thu, Sep 01, 2016 at 11:00:39AM +0100, Marius Bakke wrote: > I had these in inputs initially and was surprised to see no references. > Both seems to be compiled into the final program[0]: when running "mash > info" on an invalid file (the provided data/refseq.msh), a generic > capnproto exceptio

Re: [PATCH] gnu: Add mash.

2016-09-01 Thread Marius Bakke
Leo Famulari writes: >> + (add-after 'unpack 'fix-includes >> + (lambda _ >> + (substitute* '("src/mash/Sketch.cpp" >> "src/mash/CommandFind.cpp") >> + (("^#include \"kseq\\.h\"") >> +"#include \"htslib/kseq.h\"")) >> + #t)

Re: [PATCH] gnu: Add mash.

2016-08-31 Thread Ricardo Wurmus
Leo Famulari writes: > On Tue, Aug 30, 2016 at 06:54:49PM +0100, Marius Bakke wrote: >> * gnu/packages/bioinformatics.scm (mash): New variable. > > Thanks! > >> + (add-after 'unpack 'fix-includes >> + (lambda _ >> + (substitute* '("src/mash/Sketch.cpp" >> "src/mash

Re: [PATCH] gnu: Add mash.

2016-08-31 Thread Leo Famulari
On Tue, Aug 30, 2016 at 06:54:49PM +0100, Marius Bakke wrote: > * gnu/packages/bioinformatics.scm (mash): New variable. Thanks! > + (add-after 'unpack 'fix-includes > + (lambda _ > + (substitute* '("src/mash/Sketch.cpp" "src/mash/CommandFind.cpp") > + (

[PATCH] gnu: Add mash.

2016-08-30 Thread Marius Bakke
>From 2097408c8e94d10423d4a156caa5298d6dcb Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Tue, 30 Aug 2016 18:49:21 +0100 Subject: [PATCH 1/1] gnu: Add mash. * gnu/packages/bioinformatics.scm (mash): New variable. --- gnu/packages/bioinformatics.scm | 53 ++